| Back to Long Tests report for BioC 3.20 |
This page was generated on 2024-12-07 23:55 -0500 (Sat, 07 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4739 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4482 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4510 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 6/32 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.12.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.12.0.tar.gz |
| StartedAt: 2024-12-07 16:01:06 -0500 (Sat, 07 Dec 2024) |
| EndedAt: 2024-12-07 16:08:10 -0500 (Sat, 07 Dec 2024) |
| EllapsedTime: 424.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-12-07 16:05:23.105][biodb::testContext]
biodb.INFO [2024-12-07 16:05:23.107][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:05:23.108][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-12-07 16:05:23.109][biodb::testContext] ********************************************************************************
biodb.INFO [2024-12-07 16:05:23.110][biodb::testContext]
biodb.INFO [2024-12-07 16:05:23.117][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:05:23.119][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-12-07 16:05:23.127][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:05:23.128][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-12-07 16:05:23.129][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-12-07 16:05:23.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.133][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-12-07 16:05:23.153][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-12-07 16:05:23.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.157][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-12-07 16:05:23.158][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-12-07 16:05:23.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.162][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-12-07 16:05:23.163][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-12-07 16:05:23.164][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-12-07 16:05:23.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.168][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-12-07 16:05:23.169][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-12-07 16:05:23.170][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-12-07 16:05:23.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.173][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-12-07 16:05:23.174][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-12-07 16:05:23.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.178][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-12-07 16:05:23.179][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-12-07 16:05:23.180][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-12-07 16:05:23.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.184][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-12-07 16:05:23.185][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-12-07 16:05:23.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.189][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-12-07 16:05:23.190][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-12-07 16:05:23.191][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-12-07 16:05:23.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.195][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:05:23.196][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-12-07 16:05:23.197][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-12-07 16:05:23.198][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-12-07 16:05:23.199][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-12-07 16:05:23.200][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-12-07 16:05:23.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.203][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-12-07 16:05:23.205][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-12-07 16:05:23.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.208][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-12-07 16:05:23.209][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-12-07 16:05:23.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.213][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-12-07 16:05:23.214][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-12-07 16:05:23.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.218][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-12-07 16:05:23.219][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-12-07 16:05:23.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.223][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-12-07 16:05:23.224][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-12-07 16:05:23.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.227][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-12-07 16:05:23.228][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-12-07 16:05:23.232][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-12-07 16:05:23.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.236][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-12-07 16:05:23.237][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-12-07 16:05:23.238][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-12-07 16:05:23.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.245][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-12-07 16:05:23.281][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.304][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-12-07 16:05:23.305][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.306][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:05:23.307][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.308][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.309][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.310][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.311][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:05:23.311][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:05:23.312][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.313][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-12-07 16:05:23.314][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:05:23.315][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.316][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.317][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:05:23.317][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:05:23.317][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:05:23.317][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:05:23.317][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:05:23.318][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:05:23.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.320][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:05:23.321][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.323][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.324][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.324][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:05:23.325][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:05:23.326][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.327][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.328][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-12-07 16:05:23.330][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.330][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:05:23.331][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.332][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:05:23.333][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.334][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.335][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.336][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.337][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:05:23.337][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:05:23.338][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.339][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-12-07 16:05:23.340][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:05:23.341][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.342][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.343][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:05:23.343][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:05:23.343][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:05:23.343][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-12-07 16:05:23.343][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-12-07 16:05:23.344][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:05:23.344][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.345][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.346][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:05:23.347][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.348][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.349][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.349][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.350][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:05:23.351][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:05:23.352][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.353][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.354][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-12-07 16:05:23.355][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.356][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-12-07 16:05:23.357][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.358][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:05:23.359][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.360][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.361][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.361][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.362][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-12-07 16:05:23.363][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:05:23.364][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.365][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-12-07 16:05:23.366][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:05:23.367][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.368][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.369][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.369][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:05:23.370][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.371][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.372][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:05:23.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.374][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.375][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.376][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:05:23.377][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:05:23.378][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.379][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.380][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-12-07 16:05:23.381][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.382][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-12-07 16:05:23.383][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.384][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:05:23.385][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.386][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.387][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.387][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.388][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-12-07 16:05:23.389][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:05:23.390][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.391][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-12-07 16:05:23.392][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:05:23.393][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.394][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.394][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.395][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-12-07 16:05:23.396][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.397][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.398][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:05:23.399][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.399][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.400][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.401][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.402][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:05:23.403][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:05:23.404][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.405][self$setPropertyValue]
biodb.DEBUG[2024-12-07 16:05:23.408][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:05:23.409][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.477][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-12-07 16:05:23.481][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-12-07 16:05:23.483][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-12-07 16:05:23.484][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-12-07 16:05:23.485][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-07 16:05:23.486][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-12-07 16:05:23.488][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-12-07 16:05:23.489][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-12-07 16:05:23.490][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-12-07 16:05:23.499][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-12-07 16:05:23.502][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-07 16:05:23.503][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-12-07 16:05:23.505][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-12-07 16:05:23.506][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-12-07 16:05:23.507][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-12-07 16:05:23.509][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-12-07 16:05:23.510][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-12-07 16:05:23.512][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-12-07 16:05:23.513][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-07 16:05:23.514][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-12-07 16:05:23.516][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-12-07 16:05:23.517][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-12-07 16:05:23.519][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-12-07 16:05:23.520][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-12-07 16:05:23.521][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-12-07 16:05:23.523][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-12-07 16:05:23.524][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-12-07 16:05:23.526][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-12-07 16:05:23.527][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-12-07 16:05:23.528][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-12-07 16:05:23.530][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-12-07 16:05:23.531][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-12-07 16:05:23.533][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-12-07 16:05:23.534][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-12-07 16:05:23.535][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-12-07 16:05:23.555][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-12-07 16:05:23.556][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-12-07 16:05:23.557][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-12-07 16:05:23.559][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-12-07 16:05:23.560][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-12-07 16:05:23.561][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-12-07 16:05:23.563][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-12-07 16:05:23.564][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-12-07 16:05:23.566][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-12-07 16:05:23.567][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-12-07 16:05:23.568][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-12-07 16:05:23.570][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-12-07 16:05:23.571][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-12-07 16:05:23.573][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-12-07 16:05:23.574][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-12-07 16:05:23.575][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-12-07 16:05:23.577][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-12-07 16:05:23.578][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-12-07 16:05:23.580][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-12-07 16:05:23.581][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-12-07 16:05:23.582][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-12-07 16:05:23.584][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-12-07 16:05:23.586][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-12-07 16:05:23.587][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-12-07 16:05:23.589][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-12-07 16:05:23.590][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-12-07 16:05:23.591][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-12-07 16:05:23.593][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-12-07 16:05:23.594][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-12-07 16:05:23.595][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-12-07 16:05:23.597][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-12-07 16:05:23.598][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-07 16:05:23.599][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-07 16:05:23.601][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-12-07 16:05:23.602][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-12-07 16:05:23.603][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-12-07 16:05:23.605][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-12-07 16:05:23.606][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-12-07 16:05:23.608][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-12-07 16:05:23.609][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-12-07 16:05:23.610][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-12-07 16:05:23.612][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-12-07 16:05:23.613][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-12-07 16:05:23.614][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-12-07 16:05:23.616][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-12-07 16:05:23.617][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-12-07 16:05:23.618][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-12-07 16:05:23.620][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-12-07 16:05:23.626][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-12-07 16:05:23.628][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-12-07 16:05:23.631][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-12-07 16:05:23.632][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.634][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-12-07 16:05:23.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:23.742][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2024-12-07 16:05:23.752][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-12-07 16:05:23.754][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.769][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.769][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.770][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-12-07 16:05:23.771][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.772][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.773][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.774][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-12-07 16:05:23.775][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-12-07 16:05:23.776][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-12-07 16:05:23.777][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.778][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-12-07 16:05:23.778][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-12-07 16:05:23.779][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-12-07 16:05:23.780][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-12-07 16:05:23.781][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-12-07 16:05:23.781][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-12-07 16:05:23.781][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-12-07 16:05:23.782][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-12-07 16:05:23.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.785][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-12-07 16:05:23.786][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-12-07 16:05:23.786][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-12-07 16:05:23.787][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-12-07 16:05:23.788][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:23.788][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-12-07 16:05:23.789][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-12-07 16:05:23.794][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-12-07 16:05:23.795][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-12-07 16:05:23.796][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-12-07 16:05:23.796][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-12-07 16:05:23.801][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-12-07 16:05:23.802][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-12-07 16:05:23.804][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-12-07 16:05:23.805][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-12-07 16:05:23.806][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-12-07 16:05:23.808][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-12-07 16:05:23.829][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-12-07 16:05:23.830][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-12-07 16:05:23.833][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-12-07 16:05:23.837][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-12-07 16:05:23.841][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:05:23.842][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-12-07 16:05:23.843][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-12-07 16:05:23.844][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-12-07 16:05:23.852][biodb::testThat]
biodb.INFO [2024-12-07 16:05:23.853][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-12-07 16:05:23.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:23.854][biodb::testThat]
biodb.TRACE[2024-12-07 16:05:23.857][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-12-07 16:05:23.859][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:23.862][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:23.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:23.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:23.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:23.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:23.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:23.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:23.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:23.895][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:23.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:23.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:23.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:23.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.913][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:23.914][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:23.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:23.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.944][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:23.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:23.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:23.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:23.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:23.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:23.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:23.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:23.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:23.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:23.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.966][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:23.967][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:23.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:23.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:23.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.974][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:23.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:23.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.977][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:23.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:23.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:23.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:23.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:23.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:23.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:23.996][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:23.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:23.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:23.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:24.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.004][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.005][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:24.085][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-12-07 16:05:24.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.129][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:24.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:24.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:24.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:24.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:24.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:24.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.249][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.297][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.321][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.345][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.368][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.392][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.412][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.416][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.429][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.447][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.467][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.468][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.493][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.527][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.534][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.535][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.540][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.553][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.559][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.560][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.565][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.578][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.579][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.584][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.608][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2024-12-07 16:05:24.643][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:24.644][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:24.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:24.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:24.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:24.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:24.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:24.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:24.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:24.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.680][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.680][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:24.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:24.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.687][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.710][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.717][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:24.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.721][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:24.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:24.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.731][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.739][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:24.740][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.746][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.747][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:24.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:24.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:24.789][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2024-12-07 16:05:24.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:24.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:24.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:24.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:24.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:24.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:24.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:24.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:24.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:24.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:24.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:24.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:24.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.918][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:24.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:24.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:24.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.989][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:24.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.017][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:25.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.020][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:25.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.077][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.081][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.088][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.101][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.112][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.125][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.128][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.132][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.135][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.136][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.183][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.223][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.230][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.231][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.236][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.256][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.261][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.264][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.270][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.274][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.280][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.286][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.287][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.293][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2024-12-07 16:05:25.294][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:25.295][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:25.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:25.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:25.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:25.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:25.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:25.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:25.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:25.306][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.313][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.321][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.350][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:25.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.364][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.371][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:25.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.374][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:25.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:25.425][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2024-12-07 16:05:25.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:25.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:25.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:25.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:25.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.524][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.615][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.619][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.646][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.686][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.693][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.694][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.710][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.717][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.718][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.737][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.741][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.743][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.764][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.777][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.783][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.786][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.800][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.801][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.806][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.819][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.831][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.832][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.838][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.847][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:05:25.853][biodb::testThat]
biodb.INFO [2024-12-07 16:05:25.853][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-12-07 16:05:25.854][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:25.855][biodb::testThat]
biodb.DEBUG[2024-12-07 16:05:25.857][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2024-12-07 16:05:25.863][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-12-07 16:05:25.867][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2024-12-07 16:05:25.868][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-12-07 16:05:25.871][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-12-07 16:05:25.872][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:25.873][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-12-07 16:05:25.874][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:25.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:25.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:25.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:25.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:25.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:25.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:25.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:25.885][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.892][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.893][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:25.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.900][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.903][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:25.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.915][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.922][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.925][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:25.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.929][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:25.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.932][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:25.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:25.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.943][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:25.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:25.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.951][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:25.952][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:25.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:25.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:25.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:25.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:25.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:25.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:25.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:25.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:26.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:26.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:26.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:26.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:26.005][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.012][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:26.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:26.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.015][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:26.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:26.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.019][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:26.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:26.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:26.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.027][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.027][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.034][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.035][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.041][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.042][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.048][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:26.049][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.063][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.070][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:26.071][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:26.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:26.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.077][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:26.078][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:26.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:26.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:26.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:26.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:26.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:26.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:26.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:26.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:26.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:26.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:26.120][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.127][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:26.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:26.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:26.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.134][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:26.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:26.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:26.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:26.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.149][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.150][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:26.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.163][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:26.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.167][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:26.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.171][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.172][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.178][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.185][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:26.186][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:26.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.192][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:26.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:26.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.197][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:26.198][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:26.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:26.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:26.260][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2024-12-07 16:05:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:05:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:05:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:05:26.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:05:26.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:05:26.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:05:26.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:05:26.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:05:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:05:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:05:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:05:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:05:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-12-07 16:05:26.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-12-07 16:05:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:05:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-12-07 16:05:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:05:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-12-07 16:05:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:05:26.305][biodb::testThat]
biodb.INFO [2024-12-07 16:05:26.306][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-12-07 16:05:26.307][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:26.308][biodb::testThat]
biodb.TRACE[2024-12-07 16:05:26.310][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.313][ef$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:26.314][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-12-07 16:05:26.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:26.348][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-12-07 16:05:26.352][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-12-07 16:05:26.371][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:26.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-12-07 16:05:26.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:26.392][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-12-07 16:05:26.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:26.416][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:26.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:05:26.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:26.420][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:05:26.421][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-12-07 16:05:26.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:26.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.435][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.437][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:05:26.441][biodb::testThat]
biodb.INFO [2024-12-07 16:05:26.442][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-12-07 16:05:26.443][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:26.443][biodb::testThat]
biodb.TRACE[2024-12-07 16:05:26.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:26.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:26.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:26.522][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:26.525][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:26.526][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:05:26.527][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:26.528][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-12-07 16:05:26.541][biodb::testThat]
biodb.INFO [2024-12-07 16:05:26.542][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-12-07 16:05:26.543][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:26.544][biodb::testThat]
biodb.TRACE[2024-12-07 16:05:26.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:26.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:26.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:26.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.584][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:26.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:26.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:26.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:26.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:26.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-12-07 16:05:26.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-12-07 16:05:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:26.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-12-07 16:05:26.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:26.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-12-07 16:05:26.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:26.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:05:26.639][biodb::testThat]
biodb.INFO [2024-12-07 16:05:26.640][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-12-07 16:05:26.641][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:26.642][biodb::testThat]
biodb.INFO [2024-12-07 16:05:26.649][biodb::testThat]
biodb.INFO [2024-12-07 16:05:26.650][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-12-07 16:05:26.651][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:26.652][biodb::testThat]
biodb.INFO [2024-12-07 16:05:26.659][biodb::testThat]
biodb.INFO [2024-12-07 16:05:26.660][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-12-07 16:05:26.661][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:26.662][biodb::testThat]
biodb.DEBUG[2024-12-07 16:05:26.665][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-12-07 16:05:28.007][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-12-07 16:05:29.594][biodb::testThat]
biodb.INFO [2024-12-07 16:05:29.595][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-12-07 16:05:29.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:29.597][biodb::testThat]
biodb.DEBUG[2024-12-07 16:05:30.026][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-12-07 16:05:30.694][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:30.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:30.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.698][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:30.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.700][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:05:30.702][biodb::testThat]
biodb.INFO [2024-12-07 16:05:30.703][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-12-07 16:05:30.704][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:30.704][biodb::testThat]
biodb.TRACE[2024-12-07 16:05:30.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:30.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:30.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:30.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:30.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:30.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:30.789][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:30.791][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:30.793][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:05:30.794][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:30.795][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:05:30.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:30.862][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:30.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:05:30.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:30.865][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-12-07 16:05:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:05:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:05:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:30.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:30.907][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:30.909][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:30.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:05:30.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:30.913][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:05:30.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:30.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:30.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:30.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:30.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:30.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:30.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:30.924][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-12-07 16:05:30.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:30.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-12-07 16:05:30.972][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:30.973][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:30.974][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:30.975][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:30.976][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:30.977][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:30.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:30.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:30.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:30.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:30.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:30.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:30.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:30.989][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-12-07 16:05:30.992][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:30.992][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:30.994][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-12-07 16:05:31.356][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-12-07 16:05:31.721][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:31.723][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-12-07 16:05:31.736][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-12-07 16:05:31.738][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-12-07 16:05:31.739][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:31.741][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:31.742][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:31.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:31.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:31.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:31.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:31.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:31.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:31.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:31.753][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.756][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.760][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:31.761][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:31.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:31.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.768][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:31.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:31.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:31.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:31.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:31.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:31.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:31.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:31.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:31.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:31.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:31.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.790][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:31.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:31.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.794][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:31.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.797][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:31.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:31.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.808][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:31.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:31.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:31.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:31.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.816][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:31.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:31.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:31.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:31.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:31.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:31.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:31.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:31.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:31.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:31.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:31.873][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-12-07 16:05:31.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:31.893][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:31.896][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:31.897][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:05:31.898][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:31.900][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:05:31.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:31.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:31.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:31.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:31.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:31.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:31.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:31.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:31.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:31.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:31.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:31.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:31.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:31.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:31.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:31.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:31.943][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-12-07 16:05:31.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:31.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-12-07 16:05:31.946][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:31.947][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:31.948][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:31.949][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:31.950][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:31.951][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:31.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:31.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:31.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:31.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:31.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:31.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:31.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:31.973][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-12-07 16:05:31.990][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:31.991][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:32.005][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-12-07 16:05:32.370][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-12-07 16:05:32.737][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:32.739][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-12-07 16:05:32.742][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-12-07 16:05:32.744][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-12-07 16:05:32.745][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:32.746][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:32.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:32.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:32.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:32.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:32.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:32.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:32.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:32.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:32.759][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.767][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:32.768][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:32.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:32.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.774][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:32.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:32.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:32.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:32.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:32.782][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:32.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.789][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.790][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.796][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:32.797][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:32.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.800][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:32.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.815][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:32.816][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:32.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.822][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:32.823][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:32.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.830][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:32.831][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:32.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:32.880][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-12-07 16:05:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:32.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:32.909][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:32.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:05:32.911][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:32.912][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:05:32.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:32.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:32.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:32.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:32.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:32.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:32.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:32.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:32.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:32.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:32.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:32.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:32.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:32.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:32.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:32.943][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-12-07 16:05:32.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:32.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-12-07 16:05:32.946][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:32.948][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-12-07 16:05:32.948][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:32.950][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:32.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:32.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:32.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:32.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:32.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:32.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:32.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:32.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:32.962][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:32.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:32.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.969][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:32.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:32.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.973][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:32.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:32.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.977][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:32.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:32.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.980][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.981][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:32.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.984][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:32.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:32.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.988][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:32.989][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:32.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.990][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.993][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:32.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.995][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:32.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:32.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:32.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:32.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.003][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.013][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.054][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-12-07 16:05:33.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:33.082][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-12-07 16:05:33.083][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:33.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-12-07 16:05:33.085][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:33.087][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-12-07 16:05:33.088][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:33.089][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:33.090][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:33.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:33.102][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.109][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.110][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.113][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.120][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.124][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.125][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.128][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.129][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.135][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.143][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.147][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.150][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.151][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.195][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-12-07 16:05:33.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:33.223][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-12-07 16:05:33.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:33.225][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-12-07 16:05:33.226][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:33.227][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-12-07 16:05:33.228][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:33.229][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:33.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:33.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:33.242][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.249][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.253][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.264][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.265][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.268][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.269][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.275][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.283][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.284][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.330][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-12-07 16:05:33.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:33.380][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-12-07 16:05:33.381][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:33.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-12-07 16:05:33.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:33.385][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-12-07 16:05:33.386][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:33.387][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:33.388][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:33.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:33.400][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.407][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.408][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.411][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.414][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.424][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.429][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.430][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.440][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.444][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.445][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.447][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.458][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.461][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.466][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.467][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.474][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.521][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-12-07 16:05:33.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:33.542][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-12-07 16:05:33.543][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:33.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-12-07 16:05:33.545][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:33.547][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-12-07 16:05:33.548][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:33.549][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:33.550][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:33.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:33.561][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.568][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.569][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.572][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.576][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.591][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.605][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.609][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.620][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.622][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.631][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.691][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-12-07 16:05:33.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:33.718][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-12-07 16:05:33.719][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:33.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-12-07 16:05:33.722][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:33.724][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-12-07 16:05:33.725][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:33.726][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:33.728][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:33.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:33.741][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.742][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.750][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.758][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.761][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.782][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.786][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.790][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.796][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.803][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.811][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.816][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.820][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.821][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.878][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-12-07 16:05:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:33.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:33.898][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-12-07 16:05:33.899][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:33.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-12-07 16:05:33.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:33.903][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-12-07 16:05:33.904][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:33.905][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:33.906][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:33.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:33.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:33.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:33.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:33.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:33.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:33.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:33.918][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:33.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.925][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.926][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:33.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:33.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.932][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:33.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:33.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.940][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.941][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.949][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:33.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.958][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.965][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:33.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.980][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.990][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:33.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:33.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.035][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-12-07 16:05:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.056][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-12-07 16:05:34.057][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:34.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-12-07 16:05:34.059][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:34.061][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-12-07 16:05:34.062][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:34.063][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:34.064][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:34.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:34.076][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.083][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.091][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.105][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.116][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.131][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.132][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.139][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.140][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.146][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.147][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.194][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-12-07 16:05:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.215][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-12-07 16:05:34.216][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:34.217][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-12-07 16:05:34.218][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:34.220][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-12-07 16:05:34.221][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:34.222][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:34.223][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:34.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:34.234][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.242][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.250][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.252][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.276][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.290][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.298][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.299][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.305][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.306][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.352][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-12-07 16:05:34.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.373][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-12-07 16:05:34.374][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:34.375][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-12-07 16:05:34.376][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:34.378][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-12-07 16:05:34.379][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:34.380][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:34.381][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:34.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:34.392][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.400][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.401][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.422][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.424][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.430][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.433][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.435][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.447][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.455][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.456][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.462][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.463][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.509][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-12-07 16:05:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.530][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-12-07 16:05:34.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:34.532][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-12-07 16:05:34.533][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:34.535][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-12-07 16:05:34.536][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:34.537][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:34.538][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:34.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:34.549][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.556][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.564][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.571][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.582][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.586][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.597][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.598][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.651][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-12-07 16:05:34.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.676][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-12-07 16:05:34.676][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:34.678][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-12-07 16:05:34.679][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:34.680][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-12-07 16:05:34.681][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:34.682][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:34.683][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:34.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:34.695][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.702][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.703][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.705][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.709][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.724][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.725][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.728][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.729][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.742][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.743][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.750][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.751][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.758][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.797][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-12-07 16:05:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.821][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-12-07 16:05:34.823][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:34.824][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-12-07 16:05:34.825][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:34.827][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-12-07 16:05:34.828][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:34.829][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:34.830][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:34.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:34.841][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.849][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:34.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:34.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.856][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:34.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:34.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:34.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.878][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.879][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:34.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.882][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.883][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.889][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:34.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.897][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:34.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:34.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.904][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.905][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:34.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:34.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.911][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.912][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.955][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-12-07 16:05:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:34.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:34.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:34.979][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-12-07 16:05:34.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:34.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-12-07 16:05:34.984][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:34.985][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-12-07 16:05:34.986][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:34.987][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:34.988][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:34.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:34.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:34.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:34.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:34.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:34.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:34.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.000][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.007][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.008][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.014][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.018][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.029][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.030][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.032][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.037][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.038][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.040][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.041][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.044][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.055][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.063][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.113][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-12-07 16:05:35.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:35.139][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-12-07 16:05:35.140][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:35.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-12-07 16:05:35.142][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:35.144][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-12-07 16:05:35.145][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:35.146][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:35.147][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:35.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.158][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.166][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.167][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.170][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.173][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.181][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.182][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.198][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.199][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.214][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.221][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.222][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.224][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.228][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.231][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.271][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-12-07 16:05:35.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:35.296][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-12-07 16:05:35.297][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:35.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-12-07 16:05:35.300][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:35.301][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-12-07 16:05:35.302][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:35.303][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:35.304][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:35.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.315][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.323][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.324][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.325][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.330][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.331][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.352][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.356][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.358][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.370][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.378][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.379][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.428][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-12-07 16:05:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:35.453][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-12-07 16:05:35.454][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:35.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-12-07 16:05:35.456][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:35.458][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-12-07 16:05:35.459][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:35.460][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:35.461][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:35.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.472][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.475][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.479][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.480][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.487][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.494][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.501][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.502][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.504][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.512][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.513][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.516][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.521][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.527][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.528][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.534][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.535][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.543][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.585][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-12-07 16:05:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:35.610][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-12-07 16:05:35.611][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:35.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-12-07 16:05:35.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:35.615][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-12-07 16:05:35.616][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:35.617][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:35.618][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:35.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.629][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.632][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.637][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.644][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.645][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.666][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.670][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.671][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.680][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.684][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.694][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.742][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-12-07 16:05:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:35.767][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-12-07 16:05:35.768][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:35.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-12-07 16:05:35.771][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:35.772][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-12-07 16:05:35.773][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:35.774][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:35.775][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:35.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.786][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.794][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:35.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.801][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.802][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:35.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.823][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.824][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:35.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.827][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.831][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:35.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.841][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:35.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.849][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.850][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.853][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:35.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:35.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.857][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:35.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:35.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:35.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:35.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.899][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-12-07 16:05:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:35.933][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:35.934][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:05:35.935][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:35.936][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:05:35.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:35.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:35.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:35.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:35.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:35.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:35.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:35.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:35.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:35.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:35.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:35.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:36.416][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:36.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-12-07 16:05:36.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:36.419][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-12-07 16:05:36.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:36.425][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:36.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-12-07 16:05:36.427][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:36.428][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-12-07 16:05:36.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:36.440][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-12-07 16:05:36.441][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:36.442][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-12-07 16:05:36.443][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:36.444][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-12-07 16:05:36.445][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:36.446][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:36.447][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:36.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.459][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.467][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:36.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:36.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.474][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:36.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:36.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:36.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:36.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:36.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:36.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.489][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.496][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:36.497][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:36.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.500][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:36.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:36.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.504][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:36.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.518][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:36.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:36.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.526][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:36.527][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:36.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:36.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:36.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.581][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-12-07 16:05:36.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:36.621][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-12-07 16:05:36.622][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:36.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-12-07 16:05:36.624][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:36.626][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-12-07 16:05:36.627][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:36.628][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:36.629][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:36.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.640][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.647][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:36.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:36.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:36.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.655][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:36.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:36.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.662][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:36.663][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:36.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:36.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.672][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:36.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:36.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:36.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.679][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.680][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:36.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.695][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.702][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:36.703][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:36.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:36.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:36.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.709][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:36.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:36.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:36.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:36.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.717][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:36.718][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:36.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.760][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-12-07 16:05:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.787][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:36.790][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:36.791][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:05:36.792][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:36.793][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:05:36.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:36.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:36.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:36.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:36.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:36.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:36.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:36.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:36.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:36.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.237][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:37.240][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:37.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-12-07 16:05:37.242][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:37.244][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-12-07 16:05:37.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:37.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:05:37.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:05:37.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:05:37.689][biodb::testThat]
biodb.INFO [2024-12-07 16:05:37.690][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-12-07 16:05:37.691][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:05:37.692][biodb::testThat]
biodb.TRACE[2024-12-07 16:05:37.694][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:05:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:05:37.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:05:37.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:05:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.702][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:05:37.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:05:37.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:37.761][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:37.764][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:37.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:05:37.767][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:37.768][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:05:37.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:37.797][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:37.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:05:37.800][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:37.801][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:05:37.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:37.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:37.849][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:37.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.872][private$selectFields]
biodb.TRACE[2024-12-07 16:05:37.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:37.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:37.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.890][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:05:37.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.934][private$selectFields]
biodb.TRACE[2024-12-07 16:05:37.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:37.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:37.937][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.941][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.947][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:37.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:05:37.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:37.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:37.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:37.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:37.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:37.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:37.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:37.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:37.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:37.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:37.999][private$selectFields]
biodb.TRACE[2024-12-07 16:05:38.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:38.001][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:38.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:38.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.004][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:38.012][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:38.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.016][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:38.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:38.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:38.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:05:38.030][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:38.031][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:38.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:38.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:38.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:38.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:38.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:38.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:38.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:38.044][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:38.047][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:38.048][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:38.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:38.414][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:38.778][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:38.781][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2024-12-07 16:05:38.787][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2024-12-07 16:05:38.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:38.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:38.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:38.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:38.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:38.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:38.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:38.807][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2024-12-07 16:05:38.809][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:38.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2024-12-07 16:05:38.814][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:38.815][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:38.817][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:38.819][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:38.820][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:38.822][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:38.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:38.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:38.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:38.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:38.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:38.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:38.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:38.839][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2024-12-07 16:05:38.842][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:38.843][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:38.844][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2024-12-07 16:05:39.215][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2024-12-07 16:05:39.589][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:39.592][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2024-12-07 16:05:39.596][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2024-12-07 16:05:39.599][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2024-12-07 16:05:39.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:39.602][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:39.604][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:39.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:39.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:39.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:39.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:39.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:39.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:39.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:39.620][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.621][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.641][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:39.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:39.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.648][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:39.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:39.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:39.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:39.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:39.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:39.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:39.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:39.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.671][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:39.672][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:39.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.674][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:39.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.678][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:39.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:39.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.689][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:39.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:39.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:39.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.697][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:39.698][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:39.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:39.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:39.705][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:39.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.707][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:39.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:39.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:39.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:39.747][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2024-12-07 16:05:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:39.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:39.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:39.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:39.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:39.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:39.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:39.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:39.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:39.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:39.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:39.768][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2024-12-07 16:05:39.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:39.771][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2024-12-07 16:05:39.772][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:39.773][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:39.774][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:39.775][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:39.776][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:39.777][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:39.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:39.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:39.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:39.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:39.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:39.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:39.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:39.792][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2024-12-07 16:05:39.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:39.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:39.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2024-12-07 16:05:40.159][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2024-12-07 16:05:40.525][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:40.530][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2024-12-07 16:05:40.537][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2024-12-07 16:05:40.542][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2024-12-07 16:05:40.545][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:40.548][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:40.550][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:40.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:40.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:40.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:40.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:40.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:40.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:40.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:40.576][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.588][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:40.590][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:40.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:40.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.599][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:40.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:40.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:40.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:40.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:40.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:40.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.619][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.624][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:40.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:40.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.627][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:40.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.631][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:40.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:40.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.642][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:40.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:40.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:40.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.650][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:40.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:40.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:40.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:40.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:40.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:40.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:40.700][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2024-12-07 16:05:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:40.721][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:40.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:40.724][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:40.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:41.087][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:41.456][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:41.458][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2024-12-07 16:05:41.464][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2024-12-07 16:05:41.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:41.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:41.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:41.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:41.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:41.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:41.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:41.491][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2024-12-07 16:05:41.493][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:41.496][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2024-12-07 16:05:41.498][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:41.500][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:41.502][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:41.503][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:41.505][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:41.506][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:41.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:41.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:41.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:41.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:41.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:41.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:41.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:41.522][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2024-12-07 16:05:41.525][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:41.526][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:41.527][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2024-12-07 16:05:41.898][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2024-12-07 16:05:42.346][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:42.348][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2024-12-07 16:05:42.351][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2024-12-07 16:05:42.353][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2024-12-07 16:05:42.354][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:42.355][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:42.356][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:42.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:42.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:42.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:42.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:42.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:42.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:42.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:42.368][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.376][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:42.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:42.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:42.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:42.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.383][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:42.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:42.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:42.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:42.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:42.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:42.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:42.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:42.399][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:42.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:42.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:42.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:42.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:42.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.413][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:42.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.416][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.417][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.428][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:42.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:42.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:42.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.435][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:42.436][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:42.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:42.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:42.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.454][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:42.455][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:42.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:42.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:42.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:42.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:42.499][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2024-12-07 16:05:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:42.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:42.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:42.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:42.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:42.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:42.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:42.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:42.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:42.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:42.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:42.520][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2024-12-07 16:05:42.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:42.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2024-12-07 16:05:42.523][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:42.524][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:42.525][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:42.526][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:42.527][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:42.528][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:42.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:42.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:42.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:42.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:42.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:42.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:42.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:42.539][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2024-12-07 16:05:42.542][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:42.542][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:42.544][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2024-12-07 16:05:42.909][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2024-12-07 16:05:43.277][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:43.281][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2024-12-07 16:05:43.288][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2024-12-07 16:05:43.293][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2024-12-07 16:05:43.296][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:43.298][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:43.301][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:43.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:43.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:43.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:43.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:43.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:43.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:43.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:43.327][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.339][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:43.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:43.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:43.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:43.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.350][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:43.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:43.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:43.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:43.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:43.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:43.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:43.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:43.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:43.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:43.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:43.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.382][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:43.383][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:43.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.386][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:43.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.390][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:43.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.398][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.405][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:43.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:43.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:43.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.412][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:43.413][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:43.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:43.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.419][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:43.420][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:43.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:43.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:43.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:43.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:43.463][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2024-12-07 16:05:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:43.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:43.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:43.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:43.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:43.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:43.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:43.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:43.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:43.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:43.483][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2024-12-07 16:05:43.484][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:43.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2024-12-07 16:05:43.487][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:43.488][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:43.489][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:43.490][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:43.491][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:43.492][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:43.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:43.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:43.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:43.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:43.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:43.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:43.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:43.503][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2024-12-07 16:05:43.505][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:43.506][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:43.508][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2024-12-07 16:05:43.873][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2024-12-07 16:05:44.244][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:44.248][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2024-12-07 16:05:44.255][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2024-12-07 16:05:44.261][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2024-12-07 16:05:44.264][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:44.267][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:44.269][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:44.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:44.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:44.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:44.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:44.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:44.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:44.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:44.308][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.320][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:44.321][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:44.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:44.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:44.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.329][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:44.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:44.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.332][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:44.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:44.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:44.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:44.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:44.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:44.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:44.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:44.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:44.354][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:44.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.356][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.357][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:44.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.361][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:44.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.373][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:44.374][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:44.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.382][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:44.383][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:44.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:44.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:44.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.390][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:44.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:44.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:44.437][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2024-12-07 16:05:44.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:44.480][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:44.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:44.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:44.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:44.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:44.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:44.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:44.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.520][private$selectFields]
biodb.TRACE[2024-12-07 16:05:44.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:44.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:44.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.532][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:05:44.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:44.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:44.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:44.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:44.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:44.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:44.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.574][private$selectFields]
biodb.TRACE[2024-12-07 16:05:44.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:44.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:44.577][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.585][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.590][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:44.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:05:44.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:44.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:44.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:44.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:44.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:44.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:44.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:44.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.625][private$selectFields]
biodb.TRACE[2024-12-07 16:05:44.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:44.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:44.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.636][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:44.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.639][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.640][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:44.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:44.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:44.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:44.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:05:44.653][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:44.654][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:44.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:44.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:44.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:44.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:44.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:44.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:44.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:44.666][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:44.669][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:44.670][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:44.671][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:45.038][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:45.402][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:45.407][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2024-12-07 16:05:45.414][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2024-12-07 16:05:45.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:45.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:45.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:45.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:45.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:45.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:45.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:45.439][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2024-12-07 16:05:45.441][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:45.444][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2024-12-07 16:05:45.447][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:45.448][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:45.450][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:45.452][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:45.454][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:45.455][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:45.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:45.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:45.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:45.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:45.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:45.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:45.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:45.472][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2024-12-07 16:05:45.475][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:45.476][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:45.477][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2024-12-07 16:05:45.839][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2024-12-07 16:05:46.212][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:46.217][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2024-12-07 16:05:46.222][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2024-12-07 16:05:46.227][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2024-12-07 16:05:46.229][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:46.231][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:46.233][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:46.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:46.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:46.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:46.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:46.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:46.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:46.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:46.255][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.267][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:46.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:46.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.278][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:46.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:46.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:46.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:46.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:46.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:46.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:46.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:46.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:46.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.314][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:46.315][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:46.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.317][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:46.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.321][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:46.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.325][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.326][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:46.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.332][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:46.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:46.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:46.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:46.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.340][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:46.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:46.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:46.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:46.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:46.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:46.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:46.390][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2024-12-07 16:05:46.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:46.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:46.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:46.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:46.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:46.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:46.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:46.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:46.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:46.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:46.411][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2024-12-07 16:05:46.412][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:46.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2024-12-07 16:05:46.415][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:46.416][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:46.417][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:46.418][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:46.419][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:46.419][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:46.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:46.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:46.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:46.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:46.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:46.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:46.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:46.431][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2024-12-07 16:05:46.433][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:46.434][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:46.435][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2024-12-07 16:05:46.797][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2024-12-07 16:05:47.170][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:47.174][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2024-12-07 16:05:47.181][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2024-12-07 16:05:47.186][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2024-12-07 16:05:47.189][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:47.192][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:47.194][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:47.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:47.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:47.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:47.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:47.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:47.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:47.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:47.231][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.235][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.241][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:47.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:47.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.250][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:47.252][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:47.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:47.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:47.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:47.266][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:47.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:47.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:47.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:47.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:47.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.283][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:47.284][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:47.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.287][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:47.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.291][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:47.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:47.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:47.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.304][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:47.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:47.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:47.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:47.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.313][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:47.314][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:47.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.316][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:47.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:47.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.321][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:47.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:47.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:47.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:47.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:47.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:47.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:47.370][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2024-12-07 16:05:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:47.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:47.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:47.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:47.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:47.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:47.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:47.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:47.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:47.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:47.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:47.396][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2024-12-07 16:05:47.397][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:47.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2024-12-07 16:05:47.400][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:47.401][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:47.402][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:47.403][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:47.404][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:47.405][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:47.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:47.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:47.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:47.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:47.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:47.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:47.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:47.432][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2024-12-07 16:05:47.434][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:47.435][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:47.437][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2024-12-07 16:05:47.800][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2024-12-07 16:05:48.171][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:48.175][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2024-12-07 16:05:48.181][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2024-12-07 16:05:48.185][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2024-12-07 16:05:48.188][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:48.190][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:48.192][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:48.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:48.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:48.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:48.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:48.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:48.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:48.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:48.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.226][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:48.227][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:48.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:48.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.236][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:48.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:48.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:48.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:48.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:48.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:48.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.255][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:48.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:48.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.260][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:48.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:48.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.264][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:48.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:48.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.266][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:48.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:48.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:48.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:48.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:48.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:48.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.293][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:48.294][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:48.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:48.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:48.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:48.345][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2024-12-07 16:05:48.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:48.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:48.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:48.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:48.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:48.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:48.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:48.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:48.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:48.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:48.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:48.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:48.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:48.366][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2024-12-07 16:05:48.367][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:48.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2024-12-07 16:05:48.370][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:48.371][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:48.372][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:48.373][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:48.374][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:48.374][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:48.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:48.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:48.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:48.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:48.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:48.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:48.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:48.386][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2024-12-07 16:05:48.389][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:48.390][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:48.391][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2024-12-07 16:05:48.755][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2024-12-07 16:05:49.121][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:49.125][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2024-12-07 16:05:49.131][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2024-12-07 16:05:49.135][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2024-12-07 16:05:49.138][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:49.140][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:49.142][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:49.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:49.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:49.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:49.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:49.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:49.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:49.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:49.164][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.177][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:49.179][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:49.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.188][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:49.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:49.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:49.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:49.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:49.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:49.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:49.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:49.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:49.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:49.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.214][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:49.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:49.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.218][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:49.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:49.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.234][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:49.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:49.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.242][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:49.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:49.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.247][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:49.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.250][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:49.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:49.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:49.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:49.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:49.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:49.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:49.453][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2024-12-07 16:05:49.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:49.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:49.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:49.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:49.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:49.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:49.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:49.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:49.473][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2024-12-07 16:05:49.474][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:49.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2024-12-07 16:05:49.477][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:49.478][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:49.479][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:49.480][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:49.480][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:49.481][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:49.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:49.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:49.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:49.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:49.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:49.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:49.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:49.492][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2024-12-07 16:05:49.495][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:49.496][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:49.497][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2024-12-07 16:05:49.862][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2024-12-07 16:05:50.229][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:50.233][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2024-12-07 16:05:50.240][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2024-12-07 16:05:50.245][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2024-12-07 16:05:50.248][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:50.251][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:50.253][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:50.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:50.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:50.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:50.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:50.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:50.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:50.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:50.278][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.291][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:50.293][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:50.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.302][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:50.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:50.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:50.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:50.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:50.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:50.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:50.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:50.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:50.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:50.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:50.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:50.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.330][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:50.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.334][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:50.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.352][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:50.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:50.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:50.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.359][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:50.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:50.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.367][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:50.367][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:50.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:50.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:50.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:50.409][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2024-12-07 16:05:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:50.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:50.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:50.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:50.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:50.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:50.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:50.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:50.429][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2024-12-07 16:05:50.430][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:50.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2024-12-07 16:05:50.432][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:50.433][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:50.434][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:50.435][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:50.436][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:50.437][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:50.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:50.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:50.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:50.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:50.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:50.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:50.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:50.448][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2024-12-07 16:05:50.450][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:50.451][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:50.452][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2024-12-07 16:05:50.816][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2024-12-07 16:05:51.190][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:51.195][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2024-12-07 16:05:51.202][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2024-12-07 16:05:51.207][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2024-12-07 16:05:51.210][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:51.212][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:51.215][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:51.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:51.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:51.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:51.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:51.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:51.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:51.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:51.240][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.253][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:51.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:51.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.263][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:51.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:51.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:51.281][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:51.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:51.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:51.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:51.288][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:51.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:51.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:51.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.298][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:51.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.312][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:51.313][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:51.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.319][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:51.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:51.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:51.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:51.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:51.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:51.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:51.369][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2024-12-07 16:05:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:51.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:51.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:51.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:51.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:51.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:51.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:51.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:51.389][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2024-12-07 16:05:51.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:51.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2024-12-07 16:05:51.393][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:51.394][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:51.395][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:51.396][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:51.396][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:51.397][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:51.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:51.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:51.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:51.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:51.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:51.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:51.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:51.409][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2024-12-07 16:05:51.411][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:51.412][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:51.414][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2024-12-07 16:05:51.771][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2024-12-07 16:05:52.139][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:52.143][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2024-12-07 16:05:52.150][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2024-12-07 16:05:52.155][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2024-12-07 16:05:52.158][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:52.161][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:52.163][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:52.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:52.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:52.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:52.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:52.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:52.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:52.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:52.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.209][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:52.211][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:52.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:52.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.219][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:52.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:52.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.222][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:52.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:52.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:52.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:52.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:52.242][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:52.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.245][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:52.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.255][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:52.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.260][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:52.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:52.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.267][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:52.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:52.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:52.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:52.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.277][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:52.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:52.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:52.316][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2024-12-07 16:05:52.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:52.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:52.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:52.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:52.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:52.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:52.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:52.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:52.337][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2024-12-07 16:05:52.338][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:52.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2024-12-07 16:05:52.341][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:52.342][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:52.343][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:52.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:52.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:52.345][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:52.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:52.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:52.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:52.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:52.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:52.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:52.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:52.360][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2024-12-07 16:05:52.363][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:52.364][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:52.365][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2024-12-07 16:05:52.726][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2024-12-07 16:05:53.093][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:53.097][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2024-12-07 16:05:53.103][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2024-12-07 16:05:53.108][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2024-12-07 16:05:53.111][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:53.113][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:53.116][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:53.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:53.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:53.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:53.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:53.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:53.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:53.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:53.140][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.153][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:53.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:53.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.158][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.163][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:53.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:53.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:53.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:53.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:53.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:53.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.187][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:53.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:53.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.191][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:53.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.195][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:53.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.206][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:53.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:53.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:53.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.213][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:53.214][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:53.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:53.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:53.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:53.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:53.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:53.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:53.264][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2024-12-07 16:05:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:53.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:53.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:53.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:53.283][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:53.286][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:53.287][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:53.289][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:53.652][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:54.022][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:54.026][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2024-12-07 16:05:54.033][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2024-12-07 16:05:54.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:54.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:54.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:54.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:54.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:54.091][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2024-12-07 16:05:54.093][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:54.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2024-12-07 16:05:54.096][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:54.097][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:54.098][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:54.099][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:54.100][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:54.101][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:54.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:54.113][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2024-12-07 16:05:54.116][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:54.116][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:54.118][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2024-12-07 16:05:54.484][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2024-12-07 16:05:54.860][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:54.864][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2024-12-07 16:05:54.871][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2024-12-07 16:05:54.877][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2024-12-07 16:05:54.880][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:54.882][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:54.885][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:54.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:54.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:54.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:54.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:54.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:54.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:54.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:54.910][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:54.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:54.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.915][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:54.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.923][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:54.924][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:54.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:54.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:54.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.933][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:54.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:54.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:54.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:54.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:54.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:54.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:54.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:54.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:54.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:54.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.962][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:54.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:54.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.965][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:54.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:54.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.986][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:54.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:54.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:54.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.993][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:54.994][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:54.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:54.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:54.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.001][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:55.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:55.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.043][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2024-12-07 16:05:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:55.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:55.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:55.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:55.064][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2024-12-07 16:05:55.065][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:55.066][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2024-12-07 16:05:55.067][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:55.068][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:55.069][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:55.070][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:55.071][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:55.072][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:55.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:55.083][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2024-12-07 16:05:55.086][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:55.087][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:55.088][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2024-12-07 16:05:55.454][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2024-12-07 16:05:55.818][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:55.822][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2024-12-07 16:05:55.829][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2024-12-07 16:05:55.835][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2024-12-07 16:05:55.838][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:55.840][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:55.843][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:55.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:55.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:55.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:55.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:55.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:55.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:55.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:55.869][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.873][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.881][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:55.883][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:55.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:55.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.892][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:55.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:55.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:55.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:55.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.908][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:55.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:55.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:55.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:55.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.916][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:55.917][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:55.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:55.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.923][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:55.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:55.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.927][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:55.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:55.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:55.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:55.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.941][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:55.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:55.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:55.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:55.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.949][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:55.950][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:55.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.952][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.953][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:55.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:55.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:55.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:55.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:55.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:55.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:55.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:55.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:55.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:55.999][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2024-12-07 16:05:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:56.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:56.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:56.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.010][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:56.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.029][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.040][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.045][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:05:56.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.078][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.080][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.082][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.089][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.094][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.105][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:05:56.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.123][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.125][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.133][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.135][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.139][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.151][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:05:56.152][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:56.152][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:05:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:56.264][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:56.267][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:56.268][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:05:56.269][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:56.271][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:05:56.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:56.276][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:05:56.278][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:05:56.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:05:56.280][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:05:56.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:56.341][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:56.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.362][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.363][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.364][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.366][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.374][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.375][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.379][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:05:56.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.437][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.456][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.460][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:05:56.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:56.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.490][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.490][private$selectFields]
biodb.TRACE[2024-12-07 16:05:56.491][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:56.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:56.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.494][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.501][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.504][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.505][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:56.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.510][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:56.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:56.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:05:56.522][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:56.523][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:56.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:56.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:56.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:56.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:56.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:56.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:56.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:56.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:56.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:56.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:56.541][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:56.908][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:05:57.276][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:57.279][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2024-12-07 16:05:57.285][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2024-12-07 16:05:57.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:57.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:57.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:57.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:57.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:57.335][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2024-12-07 16:05:57.336][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:57.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2024-12-07 16:05:57.339][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:57.340][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:57.342][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:57.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:57.344][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:57.344][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:57.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:57.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:57.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:57.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:57.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:57.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:57.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:57.356][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2024-12-07 16:05:57.359][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:57.360][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:57.361][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2024-12-07 16:05:57.735][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2024-12-07 16:05:58.101][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:58.105][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2024-12-07 16:05:58.110][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2024-12-07 16:05:58.114][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2024-12-07 16:05:58.117][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:58.119][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:58.121][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:58.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:58.142][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.147][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.155][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:58.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:58.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.165][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:58.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:58.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.174][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:58.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:58.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.187][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:58.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.192][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.193][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.199][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:58.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.202][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:58.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.206][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:58.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.212][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.224][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:58.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:58.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:58.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.234][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:58.235][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:58.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:58.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:58.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:58.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.245][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:58.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:58.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:58.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.290][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2024-12-07 16:05:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:58.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:58.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:58.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:58.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:58.315][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2024-12-07 16:05:58.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:05:58.318][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2024-12-07 16:05:58.319][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:05:58.320][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:05:58.322][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:05:58.323][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:05:58.324][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:05:58.325][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:05:58.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:58.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:58.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:58.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:58.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:58.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:58.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:58.339][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2024-12-07 16:05:58.342][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:58.343][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:58.345][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2024-12-07 16:05:58.716][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2024-12-07 16:05:59.087][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:05:59.092][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2024-12-07 16:05:59.100][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2024-12-07 16:05:59.106][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2024-12-07 16:05:59.109][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:05:59.112][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:05:59.115][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:05:59.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:59.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:59.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:59.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:59.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:59.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:59.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:59.161][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.170][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.172][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:05:59.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:05:59.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.179][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:05:59.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:05:59.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.187][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:05:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:05:59.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:05:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.202][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.203][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:05:59.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.206][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:59.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.209][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:05:59.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:05:59.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.213][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.214][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.220][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:05:59.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:05:59.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.227][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:59.228][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:05:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:05:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:05:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:05:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:05:59.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:05:59.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:59.277][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2024-12-07 16:05:59.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:05:59.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:05:59.289][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:05:59.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:59.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:59.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:59.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:59.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:59.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:59.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:59.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.311][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.312][private$selectFields]
biodb.TRACE[2024-12-07 16:05:59.313][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:59.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:59.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.324][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.328][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:05:59.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:59.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:59.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:59.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:59.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:59.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:59.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:59.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.358][private$selectFields]
biodb.TRACE[2024-12-07 16:05:59.359][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:59.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:59.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.369][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.372][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:05:59.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:59.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:59.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:59.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:59.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:59.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:59.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:05:59.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.403][private$selectFields]
biodb.TRACE[2024-12-07 16:05:59.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:05:59.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:05:59.406][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.409][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.415][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:05:59.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.419][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:05:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:05:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:05:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:05:59.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:05:59.432][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:05:59.433][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:05:59.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:05:59.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:05:59.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:05:59.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:05:59.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:05:59.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:05:59.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:05:59.445][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:05:59.448][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:05:59.449][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:05:59.451][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:05:59.818][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:00.182][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:00.184][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2024-12-07 16:06:00.187][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2024-12-07 16:06:00.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:00.207][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2024-12-07 16:06:00.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:00.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2024-12-07 16:06:00.210][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:00.211][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:00.212][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:00.213][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:00.214][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:00.215][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:00.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:00.226][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2024-12-07 16:06:00.228][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:00.229][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:00.230][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2024-12-07 16:06:00.597][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2024-12-07 16:06:00.959][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:00.961][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2024-12-07 16:06:00.964][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2024-12-07 16:06:00.966][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2024-12-07 16:06:00.967][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:00.968][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:00.969][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:00.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:00.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:00.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:00.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:00.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:00.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:00.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:00.981][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:00.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:00.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.988][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:00.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:00.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.996][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:00.997][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:00.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:00.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:00.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.013][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.021][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.025][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:01.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.028][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:01.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.035][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.039][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.042][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.047][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:01.048][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.051][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.054][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.055][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:01.104][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2024-12-07 16:06:01.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:01.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:01.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:01.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:01.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:01.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:01.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:01.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:01.125][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2024-12-07 16:06:01.126][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:01.127][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2024-12-07 16:06:01.128][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:01.129][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:01.130][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:01.131][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:01.132][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:01.133][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:01.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:01.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:01.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:01.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:01.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:01.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:01.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:01.144][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2024-12-07 16:06:01.147][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:01.148][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:01.149][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2024-12-07 16:06:01.515][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2024-12-07 16:06:01.878][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:01.880][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2024-12-07 16:06:01.883][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2024-12-07 16:06:01.885][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2024-12-07 16:06:01.886][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:01.887][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:01.888][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:01.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:01.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:01.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:01.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:01.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:01.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:01.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:01.899][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.907][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:01.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:01.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:01.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:01.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:01.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.936][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.937][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:01.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.940][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:01.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:01.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:01.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.954][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:01.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:01.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.969][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:01.970][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:01.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.976][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.977][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:01.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.018][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2024-12-07 16:06:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:02.039][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2024-12-07 16:06:02.040][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:02.041][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2024-12-07 16:06:02.042][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:02.043][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:02.044][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:02.045][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:02.046][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:02.047][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:02.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:02.058][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2024-12-07 16:06:02.060][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:02.061][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:02.062][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2024-12-07 16:06:02.426][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2024-12-07 16:06:02.797][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:02.799][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2024-12-07 16:06:02.802][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2024-12-07 16:06:02.804][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2024-12-07 16:06:02.805][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:02.807][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:02.808][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:02.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.819][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.822][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.827][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.828][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.829][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.834][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:02.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:02.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.867][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:02.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:02.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.882][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.889][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:02.890][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.897][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:02.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:02.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:02.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.938][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2024-12-07 16:06:02.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:02.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:02.950][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:02.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:02.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:02.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:02.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:02.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:02.968][private$selectFields]
biodb.TRACE[2024-12-07 16:06:02.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:02.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:02.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:02.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:02.980][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:02.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.984][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:02.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:06:02.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:02.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:02.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.018][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.024][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.028][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:06:03.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.063][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.075][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.079][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-12-07 16:06:03.091][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:03.092][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:06:03.099][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:03.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:03.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.103][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:03.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:03.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.106][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:03.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:03.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:06:03.113][biodb::testThat]
biodb.INFO [2024-12-07 16:06:03.113][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-12-07 16:06:03.114][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:06:03.115][biodb::testThat]
biodb.TRACE[2024-12-07 16:06:03.118][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:03.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.125][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:03.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:03.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:03.187][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:03.190][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:03.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:06:03.192][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:03.193][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:06:03.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:03.218][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:03.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:06:03.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:03.221][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:06:03.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.262][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:03.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.280][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.292][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.296][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:06:03.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.333][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.334][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.343][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.344][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.348][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.360][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:06:03.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.377][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.388][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.393][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:03.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:06:03.405][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:03.406][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:03.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:03.418][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:03.421][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:03.422][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:06:03.423][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:03.424][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:06:03.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:03.474][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:03.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:06:03.476][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:03.477][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:06:03.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.538][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:03.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.556][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.558][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.568][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.572][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:06:03.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.601][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.602][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.613][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.614][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.615][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.621][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:03.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:06:03.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.651][private$selectFields]
biodb.TRACE[2024-12-07 16:06:03.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:03.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:03.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.660][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.662][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:03.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.666][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:03.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:06:03.679][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:03.680][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:03.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:03.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:03.695][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:03.696][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:06:03.697][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:03.698][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:06:03.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:03.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:03.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:03.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:03.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:03.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:03.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:03.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:03.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:03.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:03.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:03.763][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:03.764][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:03.765][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:04.147][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:04.691][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:04.696][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2024-12-07 16:06:04.717][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2024-12-07 16:06:04.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:04.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:04.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:04.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:04.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:04.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:04.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:04.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:04.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:04.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:04.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:04.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:04.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:04.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:04.773][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2024-12-07 16:06:04.774][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:04.776][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2024-12-07 16:06:04.777][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:04.778][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:04.779][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:04.780][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:04.781][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:04.782][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:04.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:04.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:04.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:04.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:04.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:04.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:04.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:04.794][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2024-12-07 16:06:04.796][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:04.797][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:04.798][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2024-12-07 16:06:05.160][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2024-12-07 16:06:05.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:05.537][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2024-12-07 16:06:05.544][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2024-12-07 16:06:05.549][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2024-12-07 16:06:05.552][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:05.554][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:05.557][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:05.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:05.582][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.595][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:05.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:05.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.605][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.617][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:05.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.631][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.632][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.637][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:05.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.641][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.647][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:05.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.652][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.659][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:05.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.676][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:05.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:05.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:05.717][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2024-12-07 16:06:05.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:05.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:05.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:05.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:05.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:05.738][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2024-12-07 16:06:05.738][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:05.740][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2024-12-07 16:06:05.741][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:05.742][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:05.743][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:05.744][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:05.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:05.746][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:05.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:05.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:05.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:05.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:05.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:05.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:05.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:05.757][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2024-12-07 16:06:05.759][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:05.760][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:05.762][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2024-12-07 16:06:06.126][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2024-12-07 16:06:06.490][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:06.493][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2024-12-07 16:06:06.498][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2024-12-07 16:06:06.502][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2024-12-07 16:06:06.504][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:06.506][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:06.508][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:06.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:06.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:06.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:06.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:06.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:06.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:06.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:06.528][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.529][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.540][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:06.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.550][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:06.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:06.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:06.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:06.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.569][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:06.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.584][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.587][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.590][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:06.591][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.593][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.594][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.600][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.605][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:06.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:06.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.612][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:06.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.621][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.622][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:06.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:06.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:06.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:06.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:06.673][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2024-12-07 16:06:06.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:06.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:06.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:06.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:06.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:06.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:06.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:06.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:06.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:06.698][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2024-12-07 16:06:06.699][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:06.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2024-12-07 16:06:06.703][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:06.704][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:06.705][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:06.706][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:06.707][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:06.708][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:06.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:06.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:06.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:06.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:06.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:06.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:06.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:06.722][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2024-12-07 16:06:06.725][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:06.726][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:06.728][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2024-12-07 16:06:07.094][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2024-12-07 16:06:07.460][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:07.465][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2024-12-07 16:06:07.472][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2024-12-07 16:06:07.477][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2024-12-07 16:06:07.480][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:07.483][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:07.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:07.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.532][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.534][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.542][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.543][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.550][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.551][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:07.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:07.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.578][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:07.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.582][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:07.583][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:07.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.592][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.597][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:07.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:07.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.604][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:07.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:07.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:07.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:07.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:07.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:07.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.654][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2024-12-07 16:06:07.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.666][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:07.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.689][private$selectFields]
biodb.TRACE[2024-12-07 16:06:07.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:07.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:07.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.701][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.705][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:07.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:06:07.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.735][private$selectFields]
biodb.TRACE[2024-12-07 16:06:07.735][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:07.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:07.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.746][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:07.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2024-12-07 16:06:07.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.779][private$selectFields]
biodb.TRACE[2024-12-07 16:06:07.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:07.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:07.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.790][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.795][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:07.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2024-12-07 16:06:07.807][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:07.808][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:06:07.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:07.876][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:07.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:07.880][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:06:07.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:07.882][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:06:07.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:07.887][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:07.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:06:07.889][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:07.890][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:06:07.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:07.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:07.951][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:07.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:07.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:07.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:07.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:07.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:07.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:07.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.969][private$selectFields]
biodb.TRACE[2024-12-07 16:06:07.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:07.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:07.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.981][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:07.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.985][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:07.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:07.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:06:08.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:08.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:08.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:08.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:08.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:08.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:08.019][private$selectFields]
biodb.TRACE[2024-12-07 16:06:08.020][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:08.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:08.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:08.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.028][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:08.030][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:08.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.032][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.034][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:08.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:06:08.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:08.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:08.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:08.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:08.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:08.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.063][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:08.064][private$selectFields]
biodb.TRACE[2024-12-07 16:06:08.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:08.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:08.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:08.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:08.075][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:08.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.079][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:08.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:06:08.092][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:08.092][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:08.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:08.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:08.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:08.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:08.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:08.104][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:08.107][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:08.108][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:08.110][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:08.488][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:08.882][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:08.886][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2024-12-07 16:06:08.894][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2024-12-07 16:06:08.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:08.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:08.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:08.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:08.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:08.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:08.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:08.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:08.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:08.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:08.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:08.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:08.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:08.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:08.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:08.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:08.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:08.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:08.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:08.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:08.984][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2024-12-07 16:06:08.985][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:08.987][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2024-12-07 16:06:08.988][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:08.989][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:08.990][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:08.991][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:08.992][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:08.992][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:08.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:08.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:08.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:09.004][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2024-12-07 16:06:09.006][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:09.007][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:09.008][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2024-12-07 16:06:09.370][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2024-12-07 16:06:09.736][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:09.741][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2024-12-07 16:06:09.747][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2024-12-07 16:06:09.752][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2024-12-07 16:06:09.755][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:09.758][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:09.760][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:09.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:09.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:09.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:09.786][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.798][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:09.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.809][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.812][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:09.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:09.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.840][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:09.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.855][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.856][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:09.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.863][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:09.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:09.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.880][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:09.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:09.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:09.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:09.920][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2024-12-07 16:06:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:09.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:09.931][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:09.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:09.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:09.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.949][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:09.950][private$selectFields]
biodb.TRACE[2024-12-07 16:06:09.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:09.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:09.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:09.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:09.961][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:09.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.965][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:09.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.977][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:06:09.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:09.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:09.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:09.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:09.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:09.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:09.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:09.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:09.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:09.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:09.994][private$selectFields]
biodb.TRACE[2024-12-07 16:06:09.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:09.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:09.997][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:09.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:09.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:10.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:10.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:10.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:06:10.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:10.044][private$selectFields]
biodb.TRACE[2024-12-07 16:06:10.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:10.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:10.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:10.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:10.055][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:10.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.059][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:10.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2024-12-07 16:06:10.072][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:10.072][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:10.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:10.084][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:10.087][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:10.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:06:10.089][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:10.090][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:06:10.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:10.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:10.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:10.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:10.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:10.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:10.160][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2024-12-07 16:06:10.161][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:10.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2024-12-07 16:06:10.164][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:10.165][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:10.166][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:10.167][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:10.168][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:10.169][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:10.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:10.185][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2024-12-07 16:06:10.187][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:10.188][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:10.189][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2024-12-07 16:06:10.552][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2024-12-07 16:06:10.921][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:10.924][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2024-12-07 16:06:10.927][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2024-12-07 16:06:10.930][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2024-12-07 16:06:10.931][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:10.933][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:10.934][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:10.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:10.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:10.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:10.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:10.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:10.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:10.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:10.947][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:10.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:10.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.956][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.957][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.959][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:10.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:10.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.965][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:10.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.976][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:10.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.981][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:10.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.989][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:10.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.992][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:10.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:10.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:10.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:10.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:10.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.002][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.006][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.009][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.013][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:11.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.022][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:11.063][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2024-12-07 16:06:11.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:11.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:11.092][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2024-12-07 16:06:11.093][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:11.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2024-12-07 16:06:11.095][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:11.096][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:11.097][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:11.098][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:11.099][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:11.100][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:11.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:11.111][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2024-12-07 16:06:11.113][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:11.114][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:11.115][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2024-12-07 16:06:11.475][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2024-12-07 16:06:11.848][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:11.850][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2024-12-07 16:06:11.853][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2024-12-07 16:06:11.855][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2024-12-07 16:06:11.856][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:11.857][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:11.858][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:11.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:11.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:11.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:11.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:11.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:11.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:11.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:11.870][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.877][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:11.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.884][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.885][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:11.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:11.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.894][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:11.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.898][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.899][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:11.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.907][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:11.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.909][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:11.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.913][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:11.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:11.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.917][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.918][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.924][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.925][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:11.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:11.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.932][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:11.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:11.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:11.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:11.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:11.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:11.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:11.989][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2024-12-07 16:06:11.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:11.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:11.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:11.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:12.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:12.010][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2024-12-07 16:06:12.010][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:12.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2024-12-07 16:06:12.013][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:12.014][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:12.015][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:12.016][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:12.017][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:12.018][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:12.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:12.029][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2024-12-07 16:06:12.031][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:12.032][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:12.033][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2024-12-07 16:06:12.400][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2024-12-07 16:06:12.843][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:12.846][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2024-12-07 16:06:12.848][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2024-12-07 16:06:12.851][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2024-12-07 16:06:12.852][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:12.853][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:12.854][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:12.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:12.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:12.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:12.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:12.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:12.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:12.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:12.866][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.873][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.874][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.877][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:12.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:12.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.881][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:12.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:12.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:12.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.898][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:12.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.903][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.904][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.911][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:12.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.914][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:12.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.934][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.937][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:12.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.941][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:12.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.944][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:12.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:12.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:12.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:12.991][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2024-12-07 16:06:12.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:12.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:12.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:12.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:13.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:13.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:13.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:13.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:13.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:13.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:13.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:13.012][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2024-12-07 16:06:13.013][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:13.014][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2024-12-07 16:06:13.016][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:13.017][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:13.017][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:13.018][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:13.019][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:13.020][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:13.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:13.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:13.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:13.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:13.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:13.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:13.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:13.032][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2024-12-07 16:06:13.034][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:13.035][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:13.036][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2024-12-07 16:06:13.404][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2024-12-07 16:06:13.769][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:13.771][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2024-12-07 16:06:13.774][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2024-12-07 16:06:13.777][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2024-12-07 16:06:13.778][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:13.779][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:13.780][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:13.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:13.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:13.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:13.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:13.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:13.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:13.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:13.791][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.799][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:13.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:13.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:13.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.824][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:13.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:13.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.839][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:13.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.843][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:13.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.847][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.849][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.854][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.855][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:13.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:13.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.861][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:13.862][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.865][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:13.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:13.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.871][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:13.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:13.910][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2024-12-07 16:06:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:13.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:13.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:13.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:13.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:13.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:13.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:13.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:13.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:13.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:13.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:13.931][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2024-12-07 16:06:13.932][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:13.933][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2024-12-07 16:06:13.934][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:13.935][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:13.936][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:13.937][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:13.938][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:13.939][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:13.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:13.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:13.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:13.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:13.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:13.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:13.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:13.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2024-12-07 16:06:13.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:13.954][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:13.955][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2024-12-07 16:06:14.329][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2024-12-07 16:06:14.697][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:14.699][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2024-12-07 16:06:14.702][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2024-12-07 16:06:14.704][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2024-12-07 16:06:14.705][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:14.707][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:14.708][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:14.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:14.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:14.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:14.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:14.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:14.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:14.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:14.719][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.727][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.728][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:14.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:14.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.734][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.736][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:14.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.751][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.756][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:14.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.758][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.759][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:14.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:14.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.766][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.774][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.781][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:14.782][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.783][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.788][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.789][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:14.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:14.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:14.831][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2024-12-07 16:06:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:14.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:14.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:14.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:14.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:14.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:14.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:14.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:14.858][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2024-12-07 16:06:14.859][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:14.860][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2024-12-07 16:06:14.861][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:14.862][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:14.863][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:14.864][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:14.865][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:14.866][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:14.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:14.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:14.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:14.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:14.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:14.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:14.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:14.877][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2024-12-07 16:06:14.879][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:14.880][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:14.881][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2024-12-07 16:06:15.248][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2024-12-07 16:06:15.612][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:15.614][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2024-12-07 16:06:15.617][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2024-12-07 16:06:15.619][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2024-12-07 16:06:15.620][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:15.621][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:15.622][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:15.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:15.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:15.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:15.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:15.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:15.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:15.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:15.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.641][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:15.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:15.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.649][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.656][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:15.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.663][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:15.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:15.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.674][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:15.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.688][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.696][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:15.697][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:15.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.703][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.704][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:15.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:15.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:15.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:15.754][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2024-12-07 16:06:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:15.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:15.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:15.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:15.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:15.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:15.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:15.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:15.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:15.774][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2024-12-07 16:06:15.775][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:15.776][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2024-12-07 16:06:15.777][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:15.778][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:15.779][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:15.780][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:15.781][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:15.782][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:15.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:15.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:15.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:15.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:15.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:15.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:15.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:15.793][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2024-12-07 16:06:15.796][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:15.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:15.798][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2024-12-07 16:06:16.170][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2024-12-07 16:06:16.535][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:16.539][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2024-12-07 16:06:16.546][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2024-12-07 16:06:16.550][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2024-12-07 16:06:16.553][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:16.555][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:16.558][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:16.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.582][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.594][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:16.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.604][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.605][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:16.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.624][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:16.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.632][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:16.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.647][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.662][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:16.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:16.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.667][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:16.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.674][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.675][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:16.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:16.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:16.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:16.716][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2024-12-07 16:06:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:16.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:16.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:16.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.746][private$selectFields]
biodb.TRACE[2024-12-07 16:06:16.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:16.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:16.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.749][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.757][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.761][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:16.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.773][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:06:16.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.791][private$selectFields]
biodb.TRACE[2024-12-07 16:06:16.792][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:16.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:16.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.802][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.807][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:16.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2024-12-07 16:06:16.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.839][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.840][private$selectFields]
biodb.TRACE[2024-12-07 16:06:16.841][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:16.842][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:16.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.846][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.851][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:16.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.856][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:16.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.867][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2024-12-07 16:06:16.868][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:16.869][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:06:16.876][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:16.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:16.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.879][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:16.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:16.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.883][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:16.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:16.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:06:16.889][biodb::testThat]
biodb.INFO [2024-12-07 16:06:16.890][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-12-07 16:06:16.890][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:06:16.891][biodb::testThat]
biodb.TRACE[2024-12-07 16:06:16.894][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:16.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.897][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:16.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:16.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.901][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:16.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:16.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:16.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:16.964][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:16.967][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:16.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:06:16.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:16.971][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:06:16.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:16.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:16.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:16.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:16.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:16.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:16.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:16.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:16.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:16.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:16.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:16.993][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:16.995][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:16.996][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:06:16.997][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:16.999][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:06:17.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.039][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:17.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.057][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.068][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:06:17.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.102][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.102][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.103][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.104][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.117][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.122][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:06:17.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.151][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.151][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.152][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.162][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.166][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:06:17.178][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:17.179][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:17.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:17.192][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:17.194][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:17.195][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:06:17.197][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:17.198][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:06:17.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.240][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:17.243][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:17.244][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:06:17.245][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:17.246][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:06:17.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.312][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:17.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.331][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.337][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.342][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.346][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.358][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:06:17.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.376][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.377][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.378][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.388][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.392][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.404][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:06:17.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.426][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.426][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.431][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.433][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.434][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.437][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.438][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.442][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:06:17.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:17.455][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:17.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:17.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:17.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:17.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:06:17.472][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:17.473][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:06:17.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:17.637][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:17.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:06:17.639][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:17.640][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:06:17.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:17.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.700][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:17.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.723][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.732][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.734][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.738][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:06:17.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.767][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.768][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.778][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.780][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.782][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:06:17.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.811][private$selectFields]
biodb.TRACE[2024-12-07 16:06:17.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:17.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:17.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.822][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:17.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.825][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.826][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:17.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:17.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:06:17.839][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:17.840][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:06:17.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:17.914][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:17.917][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:17.918][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:06:17.919][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:17.920][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:06:17.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:17.926][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:17.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:06:17.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:17.929][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:06:17.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:17.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:17.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:17.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:17.989][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:17.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:17.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:17.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:17.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:17.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:17.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:17.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.007][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.021][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.023][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.027][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:06:18.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.056][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.057][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.058][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.062][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.067][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.072][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:06:18.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.101][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.106][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.110][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.112][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.116][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.128][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:06:18.128][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:18.129][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:18.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:18.141][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:18.144][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:18.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:06:18.147][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:18.148][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:06:18.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:18.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:18.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:18.212][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:18.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.230][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.241][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.245][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:06:18.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.274][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.286][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.290][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:06:18.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.324][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.336][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.340][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.351][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:06:18.352][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:18.353][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:18.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:18.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:18.368][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:18.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:06:18.370][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:18.371][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:06:18.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:18.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:18.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:18.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:18.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.451][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.454][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.455][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.469][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.471][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:06:18.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.500][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.501][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.502][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.511][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.516][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:06:18.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:18.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.545][private$selectFields]
biodb.TRACE[2024-12-07 16:06:18.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:18.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:18.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.556][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:18.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.560][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:18.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:18.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-12-07 16:06:18.572][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:18.573][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:06:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:18.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:18.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.592][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:18.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:18.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:06:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.601][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:18.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:18.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.609][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.610][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:18.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.612][ef$get] fields variable is a list.
biodb.INFO [2024-12-07 16:06:18.613][biodb::testThat]
biodb.INFO [2024-12-07 16:06:18.614][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-12-07 16:06:18.615][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:06:18.616][biodb::testThat]
biodb.TRACE[2024-12-07 16:06:18.618][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:18.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:18.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.622][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:18.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:18.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.625][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:06:18.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:06:18.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:18.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:18.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:18.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:18.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:18.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:18.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:18.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:18.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:18.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:18.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:18.683][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:18.686][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:18.686][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:18.688][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:19.073][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:19.620][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:19.624][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2024-12-07 16:06:19.632][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2024-12-07 16:06:19.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:19.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:19.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:19.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:19.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:19.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:19.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:19.664][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2024-12-07 16:06:19.666][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:19.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2024-12-07 16:06:19.671][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:19.672][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:19.674][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:19.676][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:19.677][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:19.678][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:19.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:19.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:19.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:19.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:19.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:19.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:19.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:19.694][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2024-12-07 16:06:19.697][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:19.698][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:19.700][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2024-12-07 16:06:20.062][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2024-12-07 16:06:20.430][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:20.434][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2024-12-07 16:06:20.441][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2024-12-07 16:06:20.446][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2024-12-07 16:06:20.449][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:20.452][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:20.454][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:20.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:20.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:20.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:20.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:20.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:20.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:20.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:20.494][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.504][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:20.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:20.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:20.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.513][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:20.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:20.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:20.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:20.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.521][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:20.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:20.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.523][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:20.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:20.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:20.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:20.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:20.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:20.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:20.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.539][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:20.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:20.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.542][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:20.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:20.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.546][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:20.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:20.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:20.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:20.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.552][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:20.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.557][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:20.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:20.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:20.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.564][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:20.565][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:20.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.568][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:20.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:20.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:20.572][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:20.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:20.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:20.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:20.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:20.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:20.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:20.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:20.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:20.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:20.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:20.614][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2024-12-07 16:06:20.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:20.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:20.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:20.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:20.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:20.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:20.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:20.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:20.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:20.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:20.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:20.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:20.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:20.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:20.635][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2024-12-07 16:06:20.636][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:20.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2024-12-07 16:06:20.643][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:20.644][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:20.645][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:20.646][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:20.647][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:20.648][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:20.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:20.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:20.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:20.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:20.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:20.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:20.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:20.659][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2024-12-07 16:06:20.661][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:20.662][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:20.664][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2024-12-07 16:06:21.042][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2024-12-07 16:06:21.415][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:21.419][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2024-12-07 16:06:21.426][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2024-12-07 16:06:21.431][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2024-12-07 16:06:21.434][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:21.437][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:21.439][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:21.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:21.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:21.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:21.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:21.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:21.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:21.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:21.465][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.477][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:21.479][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:21.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.483][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:21.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:21.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.488][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:21.489][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:21.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:21.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:21.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:21.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:21.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:21.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:21.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.505][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:21.506][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:21.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.512][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:21.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:21.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:21.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.519][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:21.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:21.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:21.527][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:21.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.529][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.533][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:21.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:21.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:21.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:21.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.541][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:21.542][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:21.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:21.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:21.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:21.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:21.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:21.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:21.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:21.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:21.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:21.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:21.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:21.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:21.599][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2024-12-07 16:06:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:21.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:21.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:21.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:21.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:21.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:21.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:21.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:21.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:21.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:21.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:21.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:21.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:21.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:21.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:21.619][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2024-12-07 16:06:21.620][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:21.621][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2024-12-07 16:06:21.623][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:21.623][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:21.624][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:21.625][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:21.626][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:21.627][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:21.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:21.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:21.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:21.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:21.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:21.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:21.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:21.638][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2024-12-07 16:06:21.641][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:21.642][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:21.643][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2024-12-07 16:06:22.006][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2024-12-07 16:06:22.455][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:22.459][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2024-12-07 16:06:22.466][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2024-12-07 16:06:22.471][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2024-12-07 16:06:22.474][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:22.477][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:22.479][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:22.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:22.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:22.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:22.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:22.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:22.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:22.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:22.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.507][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.517][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:22.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:22.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:22.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:22.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.528][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:22.529][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:22.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:22.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:22.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:22.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:22.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:22.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:22.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:22.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:22.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:22.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:22.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.556][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:22.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:22.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:22.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:22.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:22.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:22.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:22.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.571][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:22.572][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:22.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:22.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.586][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:22.588][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:22.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.594][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:22.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:22.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:22.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:22.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:22.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:22.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:22.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:22.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:22.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:22.636][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2024-12-07 16:06:22.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:22.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:22.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:22.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:22.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:22.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:22.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:22.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:22.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:22.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:22.657][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2024-12-07 16:06:22.658][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:22.659][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2024-12-07 16:06:22.660][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:22.661][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:22.662][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:22.663][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:22.664][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:22.665][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:22.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:22.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:22.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:22.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:22.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:22.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:22.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:22.676][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2024-12-07 16:06:22.678][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:22.679][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:22.680][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2024-12-07 16:06:23.049][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2024-12-07 16:06:24.412][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:24.417][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2024-12-07 16:06:24.424][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2024-12-07 16:06:24.429][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2024-12-07 16:06:24.432][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:24.435][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:24.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:24.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:24.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:24.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:24.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:24.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:24.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:24.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:24.464][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.476][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:24.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:24.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:24.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.487][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:24.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:24.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:24.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:24.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:24.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:24.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:24.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:24.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:24.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:24.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:24.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:24.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.523][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:24.524][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:24.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.527][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:24.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:24.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.529][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.530][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:24.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:24.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:24.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:24.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.541][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:24.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:24.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:24.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:24.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.549][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:24.550][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:24.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:24.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.556][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:24.557][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:24.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:24.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:24.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:24.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:24.599][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2024-12-07 16:06:24.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:24.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:24.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:24.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:24.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:24.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:24.611][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:24.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:24.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:24.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:24.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:24.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:24.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:24.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:24.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.630][private$selectFields]
biodb.TRACE[2024-12-07 16:06:24.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:24.631][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:24.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.640][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:24.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:06:24.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:24.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:24.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:24.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:24.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:24.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:24.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:24.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.680][private$selectFields]
biodb.TRACE[2024-12-07 16:06:24.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:24.682][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:24.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.691][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.692][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:24.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-12-07 16:06:24.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:24.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:24.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:24.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:24.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:24.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:24.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:24.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.726][private$selectFields]
biodb.TRACE[2024-12-07 16:06:24.727][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:24.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:24.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.732][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.737][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:24.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.740][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:24.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:24.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:24.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:24.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-12-07 16:06:24.754][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:24.755][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:24.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:24.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:24.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:24.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:24.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:24.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:24.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:24.767][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:24.770][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:24.771][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:24.772][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:25.140][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:25.521][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:25.525][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2024-12-07 16:06:25.533][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2024-12-07 16:06:25.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:25.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:25.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:25.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:25.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:25.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:25.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:25.562][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2024-12-07 16:06:25.564][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:25.567][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2024-12-07 16:06:25.569][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:25.571][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:25.573][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:25.574][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:25.576][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:25.577][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:25.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:25.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:25.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:25.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:25.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:25.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:25.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:25.602][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2024-12-07 16:06:25.605][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:25.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:25.607][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2024-12-07 16:06:25.977][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2024-12-07 16:06:26.338][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:26.340][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2024-12-07 16:06:26.343][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2024-12-07 16:06:26.345][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2024-12-07 16:06:26.347][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:26.348][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:26.349][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:26.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:26.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:26.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:26.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:26.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:26.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:26.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:26.361][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.363][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.368][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:26.369][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:26.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.372][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:26.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.375][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:26.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:26.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.383][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:26.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:26.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:26.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:26.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.397][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:26.398][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:26.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.401][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:26.402][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:26.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.403][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:26.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:26.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.408][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:26.409][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:26.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:26.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.415][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:26.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:26.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:26.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.423][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:26.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:26.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.425][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:26.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:26.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:26.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:26.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:26.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:26.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:26.485][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2024-12-07 16:06:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:26.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:26.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:26.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:26.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:26.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:26.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:26.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:26.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:26.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:26.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:26.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:26.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:26.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:26.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:26.506][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2024-12-07 16:06:26.507][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:26.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2024-12-07 16:06:26.510][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:26.511][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:26.512][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:26.513][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:26.513][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:26.514][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:26.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:26.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:26.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:26.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:26.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:26.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:26.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:26.526][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2024-12-07 16:06:26.528][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:26.529][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:26.530][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2024-12-07 16:06:26.896][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2024-12-07 16:06:27.265][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:27.269][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2024-12-07 16:06:27.276][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2024-12-07 16:06:27.281][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2024-12-07 16:06:27.284][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:27.287][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:27.289][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:27.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:27.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:27.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:27.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:27.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:27.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:27.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:27.315][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.327][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:27.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:27.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:27.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:27.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.337][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:27.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:27.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:27.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:27.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.349][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:27.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:27.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.357][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:27.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:27.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.361][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:27.362][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:27.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.365][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:27.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:27.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:27.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:27.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:27.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:27.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.380][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:27.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:27.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.383][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.387][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:27.388][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:27.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.390][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:27.396][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:27.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.397][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:27.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:27.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:27.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:27.446][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2024-12-07 16:06:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:27.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:27.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:27.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:27.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:27.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:27.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:27.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:27.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:27.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:27.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:27.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:27.467][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2024-12-07 16:06:27.468][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:27.469][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2024-12-07 16:06:27.470][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:27.471][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:27.472][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:27.473][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:27.474][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:27.475][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:27.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:27.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:27.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:27.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:27.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:27.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:27.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:27.486][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2024-12-07 16:06:27.489][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:27.489][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:27.491][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2024-12-07 16:06:27.855][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2024-12-07 16:06:28.218][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:28.222][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2024-12-07 16:06:28.229][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2024-12-07 16:06:28.234][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2024-12-07 16:06:28.237][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:28.239][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:28.240][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:28.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:28.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:28.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:28.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:28.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:28.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:28.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:28.251][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.259][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:28.260][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:28.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.266][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:28.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:28.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:28.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:28.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:28.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:28.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:28.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:28.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.288][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:28.289][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:28.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.292][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:28.293][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:28.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.304][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:28.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:28.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.308][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:28.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:28.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:28.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:28.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.316][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:28.317][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:28.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:28.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.323][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:28.324][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:28.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:28.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:28.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.331][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:28.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:28.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:28.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:28.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:28.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:28.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:28.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:28.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:28.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:28.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:28.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:28.373][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2024-12-07 16:06:28.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:28.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:28.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:28.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:28.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:28.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:28.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:28.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:28.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:28.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:28.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:28.394][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2024-12-07 16:06:28.395][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:28.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2024-12-07 16:06:28.397][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:28.398][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:28.399][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:28.400][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:28.401][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:28.402][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:28.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:28.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:28.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:28.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:28.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:28.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:28.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:28.413][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2024-12-07 16:06:28.416][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:28.417][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:28.418][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2024-12-07 16:06:28.781][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2024-12-07 16:06:29.150][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:29.155][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2024-12-07 16:06:29.161][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2024-12-07 16:06:29.167][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2024-12-07 16:06:29.170][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:29.172][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:29.175][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:29.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:29.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:29.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:29.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:29.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:29.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:29.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:29.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.212][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:29.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:29.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.227][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:29.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.232][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:29.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:29.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.235][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:29.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.240][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:29.241][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:29.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:29.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:29.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:29.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:29.256][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:29.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.258][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:29.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:29.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:29.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:29.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:29.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.273][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:29.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:29.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:29.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:29.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.280][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:29.281][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:29.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.287][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:29.288][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:29.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:29.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:29.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:29.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:29.330][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2024-12-07 16:06:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:29.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:29.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:29.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:29.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:29.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:29.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:29.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:29.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:29.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:29.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:29.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:29.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:29.351][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2024-12-07 16:06:29.352][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:29.353][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2024-12-07 16:06:29.354][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:29.355][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:29.356][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:29.357][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:29.358][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:29.359][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:29.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:29.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:29.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:29.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:29.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:29.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:29.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:29.371][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2024-12-07 16:06:29.377][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:29.379][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:29.380][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2024-12-07 16:06:29.744][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2024-12-07 16:06:30.112][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:30.116][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2024-12-07 16:06:30.123][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2024-12-07 16:06:30.128][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2024-12-07 16:06:30.131][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:30.133][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:30.136][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:30.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:30.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:30.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:30.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:30.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:30.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:30.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:30.162][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.174][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:30.176][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:30.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.178][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:30.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:30.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.184][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:30.186][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:30.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:30.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:30.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:30.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:30.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:30.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:30.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:30.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:30.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.209][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:30.210][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:30.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:30.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:30.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.216][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:30.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:30.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.219][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.220][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:30.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:30.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:30.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:30.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.230][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:30.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:30.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.233][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:30.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.238][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:30.239][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:30.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:30.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:30.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:30.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:30.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:30.288][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2024-12-07 16:06:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:30.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:30.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:30.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:30.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:30.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:30.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:30.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:30.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:30.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:30.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:30.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:30.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:30.318][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2024-12-07 16:06:30.319][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:30.320][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2024-12-07 16:06:30.322][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:30.323][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:30.324][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:30.324][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:30.325][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:30.326][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:30.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:30.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:30.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:30.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:30.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:30.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:30.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:30.338][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2024-12-07 16:06:30.340][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:30.341][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:30.342][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2024-12-07 16:06:30.705][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2024-12-07 16:06:31.070][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:31.074][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2024-12-07 16:06:31.081][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2024-12-07 16:06:31.086][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2024-12-07 16:06:31.089][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:31.092][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:31.094][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:31.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:31.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:31.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:31.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:31.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:31.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:31.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:31.120][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.132][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:31.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:31.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.142][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:31.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:31.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:31.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:31.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:31.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:31.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.154][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:31.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:31.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:31.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:31.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:31.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.171][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:31.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:31.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:31.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:31.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:31.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:31.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:31.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.185][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:31.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:31.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:31.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:31.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.193][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:31.194][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:31.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.197][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:31.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:31.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.200][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:31.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:31.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.203][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:31.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:31.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:31.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:31.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:31.253][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2024-12-07 16:06:31.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:31.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:31.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:31.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:31.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:31.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:31.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:31.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:31.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:31.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:31.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:31.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:31.274][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2024-12-07 16:06:31.274][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:31.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2024-12-07 16:06:31.277][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:31.278][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:31.279][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:31.280][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:31.281][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:31.282][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:31.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:31.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:31.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:31.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:31.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:31.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:31.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:31.293][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2024-12-07 16:06:31.296][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:31.296][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:31.298][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2024-12-07 16:06:31.657][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2024-12-07 16:06:32.026][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:32.031][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2024-12-07 16:06:32.037][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2024-12-07 16:06:32.043][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2024-12-07 16:06:32.045][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:32.048][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:32.051][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:32.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:32.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:32.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:32.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:32.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:32.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:32.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:32.076][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.088][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:32.090][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:32.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:32.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:32.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.099][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:32.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:32.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:32.109][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:32.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:32.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:32.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:32.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:32.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.124][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:32.125][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:32.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.131][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:32.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:32.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:32.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:32.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:32.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:32.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.154][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:32.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:32.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.162][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:32.163][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:32.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.165][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.169][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:32.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:32.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:32.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:32.211][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2024-12-07 16:06:32.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:32.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:32.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:32.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:32.223][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:32.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:32.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:32.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:32.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:32.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:32.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:32.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:32.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.241][private$selectFields]
biodb.TRACE[2024-12-07 16:06:32.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:32.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:32.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.253][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.257][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:32.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-12-07 16:06:32.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:32.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:32.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:32.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:32.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:32.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:32.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.292][private$selectFields]
biodb.TRACE[2024-12-07 16:06:32.293][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:32.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:32.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.300][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.301][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.304][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.308][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-12-07 16:06:32.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:32.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:32.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:32.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:32.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:32.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:32.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.338][private$selectFields]
biodb.TRACE[2024-12-07 16:06:32.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:32.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:32.341][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.344][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.349][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:32.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.354][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:32.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:32.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:32.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-12-07 16:06:32.366][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:32.367][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:32.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:32.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:32.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:32.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:32.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:32.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:32.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:32.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:32.382][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:32.383][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:32.385][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:32.753][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:33.118][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:33.122][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2024-12-07 16:06:33.128][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2024-12-07 16:06:33.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:33.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:33.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:33.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:33.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:33.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:33.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:33.149][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2024-12-07 16:06:33.151][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:33.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2024-12-07 16:06:33.155][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:33.157][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:33.159][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:33.161][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:33.163][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:33.164][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:33.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:33.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:33.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:33.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:33.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:33.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:33.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:33.181][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2024-12-07 16:06:33.184][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:33.185][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:33.187][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2024-12-07 16:06:33.548][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2024-12-07 16:06:33.917][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:33.922][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2024-12-07 16:06:33.929][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2024-12-07 16:06:33.954][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2024-12-07 16:06:33.957][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:33.960][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:33.962][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:33.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:33.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:33.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:33.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:33.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:33.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:33.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:33.982][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:33.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:33.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:33.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:33.992][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:33.994][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:33.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:33.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.001][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:34.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:34.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:34.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:34.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:34.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:34.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:34.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.024][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:34.025][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:34.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.027][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:34.028][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:34.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.030][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:34.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:34.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:34.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:34.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.042][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:34.043][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:34.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:34.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.049][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:34.050][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:34.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:34.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.057][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:34.057][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:34.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:34.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:34.100][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2024-12-07 16:06:34.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:34.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:34.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:34.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:34.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:34.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:34.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:34.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:34.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:34.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:34.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:34.126][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2024-12-07 16:06:34.127][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:34.129][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2024-12-07 16:06:34.130][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:34.131][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:34.132][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:34.133][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:34.134][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:34.135][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:34.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:34.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:34.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:34.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:34.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:34.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:34.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:34.146][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2024-12-07 16:06:34.149][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:34.149][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:34.151][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2024-12-07 16:06:34.515][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2024-12-07 16:06:34.905][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:34.909][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2024-12-07 16:06:34.915][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2024-12-07 16:06:34.920][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2024-12-07 16:06:34.922][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:34.925][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:34.927][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:34.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:34.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:34.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:34.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:34.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:34.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:34.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:34.951][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.956][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:34.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.964][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:34.965][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:34.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.969][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.974][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:34.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:34.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.977][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:34.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:34.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:34.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:34.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:34.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:34.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:34.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:34.999][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:35.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:35.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.001][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.002][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:35.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:35.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:35.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:35.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:35.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:35.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.017][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:35.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:35.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.019][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:35.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:35.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.024][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:35.025][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:35.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:35.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:35.033][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:35.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:35.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:35.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:35.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:35.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:35.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:35.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:35.084][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2024-12-07 16:06:35.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:35.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:35.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:35.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:35.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:35.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:35.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:35.096][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:35.099][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:35.100][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:35.101][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:35.468][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:35.832][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:35.834][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2024-12-07 16:06:35.837][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2024-12-07 16:06:35.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:35.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:35.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:35.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:35.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:35.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:35.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:35.849][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2024-12-07 16:06:35.850][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:35.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2024-12-07 16:06:35.852][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:35.853][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:35.854][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:35.855][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:35.856][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:35.857][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:35.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:35.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:35.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:35.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:35.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:35.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:35.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:35.868][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2024-12-07 16:06:35.871][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:35.871][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:35.873][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2024-12-07 16:06:36.235][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2024-12-07 16:06:36.601][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:36.603][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2024-12-07 16:06:36.606][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2024-12-07 16:06:36.609][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2024-12-07 16:06:36.610][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:36.611][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:36.612][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:36.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:36.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:36.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:36.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:36.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:36.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:36.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:36.625][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.633][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:36.634][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:36.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:36.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.642][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:36.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:36.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.651][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:36.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:36.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.654][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:36.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:36.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.658][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:36.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:36.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:36.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.666][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:36.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:36.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.670][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:36.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.708][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:36.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:36.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.713][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:36.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:36.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:36.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:36.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.725][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:36.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:36.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.734][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:36.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:36.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:36.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:36.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:36.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:36.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:36.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:36.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:36.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:36.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:36.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:36.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:36.788][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2024-12-07 16:06:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:36.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:36.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:36.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:36.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:36.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:36.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:36.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:36.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:36.811][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2024-12-07 16:06:36.812][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:36.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2024-12-07 16:06:36.815][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:36.816][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:36.817][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:36.818][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:36.819][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:36.820][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:36.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:36.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:36.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:36.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:36.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:36.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:36.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:36.833][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2024-12-07 16:06:36.835][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:36.836][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:36.838][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2024-12-07 16:06:37.199][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2024-12-07 16:06:37.568][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:37.572][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2024-12-07 16:06:37.579][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2024-12-07 16:06:37.585][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2024-12-07 16:06:37.588][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:37.591][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:37.593][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:37.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:37.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:37.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:37.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:37.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:37.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:37.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:37.620][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.635][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.642][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:37.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:37.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:37.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.651][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:37.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:37.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:37.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:37.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:37.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:37.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:37.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:37.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:37.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:37.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.673][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:37.674][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:37.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:37.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:37.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.680][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:37.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:37.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.683][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.684][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:37.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:37.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:37.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:37.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:37.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:37.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:37.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:37.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:37.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.702][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:37.703][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:37.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:37.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.709][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:37.710][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:37.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:37.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:37.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:37.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:37.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:37.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:37.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:37.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:37.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:37.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:37.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:37.752][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2024-12-07 16:06:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:37.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:37.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:37.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:37.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:37.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:37.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:37.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:37.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:37.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:37.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:37.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:37.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:37.773][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2024-12-07 16:06:37.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:37.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2024-12-07 16:06:37.776][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:37.777][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:37.778][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:37.779][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:37.780][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:37.781][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:37.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:37.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:37.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:37.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:37.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:37.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:37.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:37.797][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2024-12-07 16:06:37.800][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:37.800][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:37.802][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2024-12-07 16:06:38.164][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2024-12-07 16:06:38.533][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:38.537][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2024-12-07 16:06:38.544][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2024-12-07 16:06:38.549][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2024-12-07 16:06:38.552][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:38.555][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:38.557][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:38.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:38.583][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.584][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.595][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:38.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:38.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.599][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:38.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:38.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.605][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:38.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:38.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:38.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:38.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:38.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.617][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:38.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:38.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:38.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:38.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:38.631][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:38.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.632][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.633][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:38.634][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:38.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:38.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:38.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:38.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.648][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:38.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:38.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.650][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:38.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:38.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.655][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:38.656][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:38.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:38.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.662][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:38.663][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:38.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:38.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:38.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:38.714][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2024-12-07 16:06:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:38.726][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:38.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:38.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.744][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.744][private$selectFields]
biodb.TRACE[2024-12-07 16:06:38.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:38.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:38.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.754][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.756][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.760][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:38.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-12-07 16:06:38.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.789][private$selectFields]
biodb.TRACE[2024-12-07 16:06:38.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:38.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:38.792][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.800][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.805][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:38.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-12-07 16:06:38.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.835][private$selectFields]
biodb.TRACE[2024-12-07 16:06:38.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:38.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:38.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.846][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.855][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.867][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-12-07 16:06:38.868][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:38.869][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:38.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:38.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:38.899][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:38.900][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:06:38.901][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:38.902][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:06:38.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:38.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:38.927][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:38.928][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:06:38.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:38.930][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:06:38.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:38.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:38.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:38.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:38.971][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:38.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:38.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:38.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:38.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:38.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:38.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:38.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:38.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.990][private$selectFields]
biodb.TRACE[2024-12-07 16:06:38.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:38.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:38.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:38.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:38.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:38.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:38.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.005][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.006][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.011][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.022][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:06:39.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.040][private$selectFields]
biodb.TRACE[2024-12-07 16:06:39.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:39.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:39.042][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.051][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.055][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:06:39.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.085][private$selectFields]
biodb.TRACE[2024-12-07 16:06:39.085][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:39.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:39.087][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.096][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.099][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.100][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:06:39.113][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:39.114][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:39.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:39.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:39.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:39.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:06:39.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:39.133][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:06:39.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.180][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:39.183][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:39.184][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:06:39.185][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:39.186][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:06:39.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.247][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:39.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.264][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.265][private$selectFields]
biodb.TRACE[2024-12-07 16:06:39.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:39.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:39.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.276][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.276][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.281][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:06:39.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.316][private$selectFields]
biodb.TRACE[2024-12-07 16:06:39.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:39.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:39.319][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.328][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.332][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:06:39.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.361][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.362][private$selectFields]
biodb.TRACE[2024-12-07 16:06:39.363][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:39.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:39.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.368][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.373][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.378][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:06:39.390][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:39.391][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:39.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:39.404][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:39.407][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:39.408][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:06:39.409][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:39.410][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:06:39.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:39.579][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:06:39.580][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:06:39.581][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:06:39.583][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:06:39.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:39.654][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:39.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.672][private$selectFields]
biodb.TRACE[2024-12-07 16:06:39.673][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:39.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:39.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.683][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.687][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.687][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.699][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:06:39.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.717][private$selectFields]
biodb.TRACE[2024-12-07 16:06:39.718][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:39.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:39.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.729][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.733][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.734][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:06:39.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:39.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.770][private$selectFields]
biodb.TRACE[2024-12-07 16:06:39.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:39.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:39.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:39.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:39.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:39.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:39.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:39.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:06:39.798][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:39.799][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:39.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:39.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:39.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:39.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:39.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:39.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:39.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:39.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:39.829][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:39.830][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:39.832][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:40.194][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:40.561][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:40.564][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2024-12-07 16:06:40.570][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2024-12-07 16:06:40.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:40.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:40.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:40.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:40.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:40.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:40.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:40.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:40.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:40.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:40.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:40.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:40.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:40.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:40.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:40.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:40.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:40.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:40.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:40.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:40.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:40.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:40.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:40.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:40.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:40.644][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2024-12-07 16:06:40.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:40.647][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2024-12-07 16:06:40.648][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:40.649][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:40.650][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:40.651][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:40.652][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:40.652][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:40.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:40.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:40.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:40.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:40.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:40.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:40.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:40.673][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2024-12-07 16:06:40.676][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:40.676][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:40.678][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2024-12-07 16:06:41.038][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2024-12-07 16:06:41.407][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:41.411][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2024-12-07 16:06:41.418][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2024-12-07 16:06:41.422][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2024-12-07 16:06:41.425][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:41.428][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:41.430][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:41.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:41.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:41.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:41.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:41.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:41.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:41.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:41.454][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.465][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:41.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:41.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:41.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:41.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.475][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:41.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:41.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.484][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:41.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:41.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:41.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:41.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:41.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:41.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.499][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:41.500][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:41.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.506][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:41.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.514][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:41.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:41.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.521][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:41.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:41.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:41.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:41.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.529][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:41.530][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:41.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.536][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:41.537][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:41.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:41.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:41.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:41.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:41.589][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2024-12-07 16:06:41.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:41.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:41.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:41.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:41.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:41.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:41.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:41.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:41.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:41.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:41.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:41.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:41.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:41.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:41.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:41.630][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2024-12-07 16:06:41.631][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:41.633][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2024-12-07 16:06:41.634][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:41.635][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:41.636][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:41.636][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:41.637][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:41.638][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:41.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:41.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:41.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:41.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:41.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:41.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:41.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:41.650][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2024-12-07 16:06:41.652][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:41.653][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:41.654][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2024-12-07 16:06:42.018][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2024-12-07 16:06:42.384][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:42.389][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2024-12-07 16:06:42.396][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2024-12-07 16:06:42.401][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2024-12-07 16:06:42.404][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:42.407][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:42.409][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:42.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:42.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:42.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:42.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:42.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:42.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:42.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:42.435][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.449][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:42.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:42.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.453][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.462][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:42.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:42.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:42.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:42.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:42.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:42.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:42.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:42.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.494][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:42.495][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:42.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.498][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:42.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:42.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.502][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:42.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:42.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:42.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:42.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:42.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:42.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:42.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.530][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:42.531][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:42.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.534][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:42.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:42.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:42.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:42.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:42.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:42.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:42.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:42.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:42.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:42.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:42.581][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2024-12-07 16:06:42.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:42.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:42.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:42.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:42.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:42.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:42.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:42.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:42.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:42.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:42.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:42.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:42.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:42.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:42.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:42.602][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2024-12-07 16:06:42.603][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:42.604][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2024-12-07 16:06:42.605][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:42.606][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:42.607][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:42.608][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:42.609][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:42.610][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:42.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:42.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:42.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:42.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:42.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:42.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:42.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:42.622][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2024-12-07 16:06:42.624][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:42.625][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:42.626][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2024-12-07 16:06:42.986][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2024-12-07 16:06:43.357][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:43.360][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2024-12-07 16:06:43.365][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2024-12-07 16:06:43.369][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2024-12-07 16:06:43.371][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:43.373][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:43.375][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:43.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:43.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:43.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:43.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:43.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:43.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:43.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:43.395][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.408][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:43.409][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:43.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.421][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:43.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.427][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:43.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:43.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:43.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:43.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:43.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:43.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:43.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:43.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:43.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.447][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:43.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:43.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:43.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:43.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.457][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.462][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:43.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:43.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.464][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:43.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.469][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:43.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:43.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:43.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:43.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:43.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:43.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:43.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:43.528][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2024-12-07 16:06:43.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:43.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:43.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:43.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:43.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:43.542][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:43.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:43.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:43.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:43.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:43.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:43.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:43.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:43.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.567][private$selectFields]
biodb.TRACE[2024-12-07 16:06:43.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:43.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:43.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.580][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.585][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:43.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:06:43.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:43.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:43.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:43.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:43.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:43.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:43.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.635][private$selectFields]
biodb.TRACE[2024-12-07 16:06:43.636][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:43.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:43.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.647][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.648][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.652][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.664][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-12-07 16:06:43.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:43.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:43.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:43.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:43.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:43.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:43.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.684][private$selectFields]
biodb.TRACE[2024-12-07 16:06:43.685][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:43.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:43.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.694][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.696][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:43.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.700][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:43.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:43.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:43.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:43.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-12-07 16:06:43.713][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:43.714][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:43.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:43.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:43.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:43.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:43.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:43.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:43.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:43.727][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:43.730][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:43.731][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:43.733][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:44.109][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:44.574][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:44.578][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2024-12-07 16:06:44.586][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2024-12-07 16:06:44.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:44.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:44.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:44.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:44.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:44.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:44.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:44.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:44.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:44.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:44.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:44.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:44.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:44.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:44.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:44.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:44.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:44.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:44.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:44.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:44.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:44.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:44.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:44.689][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:06:44.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:44.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:44.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:44.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:44.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:44.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:44.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.707][private$selectFields]
biodb.TRACE[2024-12-07 16:06:44.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:44.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:44.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.717][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.719][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.723][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:06:44.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:44.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:44.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:44.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:44.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:44.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:44.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.753][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.754][private$selectFields]
biodb.TRACE[2024-12-07 16:06:44.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:44.755][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:44.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.763][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.765][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.766][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.767][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.770][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:44.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.782][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:06:44.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:44.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:44.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:44.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:44.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:44.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:44.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.805][private$selectFields]
biodb.TRACE[2024-12-07 16:06:44.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:06:44.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:06:44.808][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.815][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.816][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:06:44.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.821][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:06:44.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:44.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:44.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:06:44.834][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:06:44.834][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:06:44.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:44.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:44.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:44.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:44.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:44.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:44.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:44.847][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:06:44.849][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:44.850][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:44.852][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:06:45.228][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:06:45.601][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:45.606][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2024-12-07 16:06:45.614][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2024-12-07 16:06:45.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:45.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:45.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:45.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:45.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:45.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:45.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:45.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:45.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:45.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:45.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:45.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:45.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:45.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:45.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:45.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:45.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:45.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:45.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:45.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:45.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:45.676][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2024-12-07 16:06:45.677][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:45.679][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2024-12-07 16:06:45.680][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:45.681][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:45.682][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:45.683][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:45.684][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:45.685][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:45.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:45.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:45.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:45.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:45.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:45.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:45.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:45.698][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2024-12-07 16:06:45.700][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:45.701][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:45.702][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2024-12-07 16:06:46.065][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2024-12-07 16:06:46.442][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:46.446][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2024-12-07 16:06:46.453][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2024-12-07 16:06:46.458][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2024-12-07 16:06:46.460][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:46.463][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:46.465][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:46.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:46.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:46.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:46.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:46.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:46.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:46.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:46.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.515][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:46.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:46.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.524][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:46.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:46.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:46.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:46.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.534][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:46.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:46.540][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:46.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:46.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:46.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.550][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:46.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:46.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:46.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.557][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:46.558][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:46.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.565][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:46.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:46.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.572][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:46.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:46.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.575][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.576][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:46.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:46.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:46.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.582][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:46.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:46.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:46.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:46.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:46.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:46.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:46.623][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2024-12-07 16:06:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:46.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:46.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:46.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:46.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:46.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:46.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:46.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:46.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:46.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:46.644][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2024-12-07 16:06:46.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:46.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2024-12-07 16:06:46.652][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:46.653][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:46.655][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:46.656][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:46.657][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:46.657][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:46.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:46.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:46.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:46.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:46.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:46.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:46.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:46.669][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2024-12-07 16:06:46.672][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:46.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:46.674][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2024-12-07 16:06:47.040][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2024-12-07 16:06:47.413][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:47.417][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2024-12-07 16:06:47.424][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2024-12-07 16:06:47.429][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2024-12-07 16:06:47.432][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:47.435][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:47.438][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:47.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:47.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:47.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:47.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:47.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:47.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:47.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:47.464][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.476][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:47.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:47.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.487][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:47.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:47.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:47.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:47.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.495][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:47.497][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:47.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.498][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:47.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:47.504][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:47.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:47.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:47.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:47.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:47.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.513][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.515][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:47.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:47.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.518][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:47.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:47.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:47.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:47.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.529][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:47.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:47.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:47.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:47.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.537][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:47.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:47.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:47.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:47.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:47.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:47.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:47.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:47.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:47.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:47.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:47.597][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2024-12-07 16:06:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:47.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:47.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:47.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:47.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:47.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:47.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:47.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:47.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:47.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:47.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:47.617][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2024-12-07 16:06:47.618][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:47.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2024-12-07 16:06:47.621][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:47.622][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:47.623][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:47.624][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:47.625][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:47.626][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:47.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:47.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:47.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:47.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:47.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:47.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:47.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:47.637][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2024-12-07 16:06:47.639][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:47.640][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:47.641][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2024-12-07 16:06:48.009][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2024-12-07 16:06:48.380][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:48.382][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2024-12-07 16:06:48.385][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2024-12-07 16:06:48.388][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2024-12-07 16:06:48.389][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:48.390][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:48.391][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:48.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:48.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:48.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:48.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:48.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:48.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:48.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:48.404][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.412][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:48.413][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:48.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.414][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:48.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:48.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.420][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:48.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:48.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:48.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:48.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.430][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:48.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:48.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:48.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:48.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:48.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:48.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.447][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:48.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:48.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:48.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.463][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:48.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:48.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.466][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:48.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:48.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:48.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:48.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:48.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:48.493][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:48.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.495][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:48.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:48.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:48.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:48.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:48.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:48.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:48.535][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2024-12-07 16:06:48.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:48.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:48.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:48.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:48.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:48.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:48.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:48.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:48.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:48.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:48.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:48.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:48.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:48.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:48.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:48.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:48.576][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2024-12-07 16:06:48.577][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:48.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2024-12-07 16:06:48.579][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:48.580][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:48.581][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:48.582][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:48.583][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:48.584][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:48.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:48.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:48.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:48.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:48.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:48.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:48.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:48.596][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2024-12-07 16:06:48.598][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:48.599][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:48.600][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2024-12-07 16:06:48.964][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2024-12-07 16:06:49.330][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:49.332][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2024-12-07 16:06:49.336][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2024-12-07 16:06:49.338][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2024-12-07 16:06:49.340][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:49.341][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:49.342][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:49.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:49.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:49.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:49.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:49.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:49.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:49.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:49.356][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.376][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:49.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:49.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.384][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:49.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:49.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:49.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:49.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:49.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:49.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:49.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:49.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:49.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.402][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:49.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.407][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:49.408][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:49.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.409][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:49.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:49.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.414][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:49.415][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:49.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:49.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:49.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:49.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.424][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.429][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:49.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:49.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.436][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:49.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:49.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.439][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:49.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.444][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:49.445][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:49.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:49.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:49.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:49.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:49.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:49.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:49.487][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2024-12-07 16:06:49.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:49.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:49.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:49.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:49.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:49.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:49.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:49.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:49.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:49.508][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2024-12-07 16:06:49.509][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:49.510][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2024-12-07 16:06:49.511][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:49.512][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:49.513][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:49.519][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:49.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:49.521][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:49.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:49.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:49.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:49.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:49.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:49.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:49.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:49.534][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2024-12-07 16:06:49.536][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:49.537][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:49.539][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2024-12-07 16:06:49.901][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2024-12-07 16:06:50.267][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:50.269][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2024-12-07 16:06:50.272][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2024-12-07 16:06:50.275][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2024-12-07 16:06:50.276][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:50.277][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:50.279][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:50.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:50.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:50.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:50.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:50.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:50.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:50.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:50.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.300][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:50.301][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:50.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.304][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:50.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.308][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:50.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:50.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:50.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:50.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:50.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:50.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.320][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:50.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:50.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:50.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:50.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:50.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:50.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.332][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:50.333][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:50.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.335][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:50.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:50.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.339][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:50.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:50.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.342][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.343][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:50.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:50.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.349][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:50.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:50.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.353][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:50.354][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:50.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.356][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:50.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.361][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:50.362][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:50.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.364][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.368][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:50.369][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:50.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:50.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:50.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:50.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:50.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:50.421][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2024-12-07 16:06:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:50.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:50.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:50.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:50.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:50.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:50.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:50.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:50.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:50.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:50.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:50.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:50.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:50.441][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2024-12-07 16:06:50.442][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:50.443][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2024-12-07 16:06:50.444][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:50.445][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:50.446][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:50.447][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:50.448][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:50.449][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:50.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:50.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:50.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:50.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:50.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:50.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:50.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:50.460][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2024-12-07 16:06:50.463][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:50.463][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:50.465][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2024-12-07 16:06:50.833][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2024-12-07 16:06:51.196][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:51.198][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2024-12-07 16:06:51.201][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2024-12-07 16:06:51.204][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2024-12-07 16:06:51.205][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:51.206][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:51.207][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:51.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:51.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:51.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:51.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:51.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:51.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:51.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:51.220][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.229][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:51.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:51.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.237][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:51.238][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:51.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.240][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:51.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:51.246][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:51.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:51.254][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:51.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:51.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.261][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:51.262][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:51.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.264][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:51.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:51.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:51.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:51.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:51.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.279][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:51.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:51.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.295][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:51.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:51.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.298][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:51.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:51.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:51.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:51.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:51.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:51.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:51.345][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2024-12-07 16:06:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:51.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:51.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:51.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:51.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:51.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:51.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:51.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:51.365][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2024-12-07 16:06:51.366][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:51.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2024-12-07 16:06:51.369][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:51.370][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:51.371][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:51.372][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:51.373][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:51.373][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:51.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:51.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:51.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:51.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:51.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:51.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:51.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:51.385][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2024-12-07 16:06:51.387][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:51.388][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:51.389][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2024-12-07 16:06:51.753][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2024-12-07 16:06:52.113][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:52.115][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2024-12-07 16:06:52.118][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2024-12-07 16:06:52.121][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2024-12-07 16:06:52.122][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:52.123][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:52.124][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:52.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:52.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:52.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:52.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:52.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:52.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:52.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:52.138][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.139][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.146][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:52.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:52.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.155][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:52.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:52.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:52.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:52.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.175][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:52.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:52.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:52.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.187][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:52.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:52.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.191][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:52.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:52.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.195][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:52.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:52.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:52.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:52.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:52.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.206][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:52.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:52.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:52.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.213][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:52.214][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:52.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:52.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:52.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:52.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:52.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:52.263][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2024-12-07 16:06:52.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:52.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:52.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:52.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:52.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:52.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:52.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:52.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:52.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:52.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:52.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:52.284][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2024-12-07 16:06:52.285][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:52.286][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2024-12-07 16:06:52.287][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:52.288][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:52.289][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:52.290][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:52.291][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:52.292][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:52.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:52.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:52.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:52.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:52.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:52.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:52.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:52.303][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2024-12-07 16:06:52.306][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:52.307][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:52.308][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2024-12-07 16:06:52.673][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2024-12-07 16:06:53.056][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:53.060][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2024-12-07 16:06:53.066][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2024-12-07 16:06:53.071][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2024-12-07 16:06:53.074][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:53.077][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:53.079][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:53.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:53.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:53.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:53.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:53.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:53.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:53.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:53.100][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.111][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:53.112][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:53.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.116][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:53.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:53.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.120][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:53.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:53.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:53.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:53.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:53.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:53.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:53.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.143][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:53.144][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:53.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.147][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:53.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:53.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:53.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:53.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.161][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:53.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:53.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.169][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:53.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:53.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.176][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:53.177][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:53.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:53.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:53.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:53.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:53.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:53.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:53.220][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2024-12-07 16:06:53.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:53.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:53.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:53.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:53.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:53.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:53.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:53.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:53.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:53.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:53.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:53.247][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2024-12-07 16:06:53.248][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:53.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2024-12-07 16:06:53.250][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:53.251][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:53.252][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:53.253][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:53.254][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:53.255][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:53.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:53.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:53.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:53.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:53.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:53.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:53.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:53.266][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2024-12-07 16:06:53.269][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:53.270][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:53.271][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2024-12-07 16:06:53.631][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2024-12-07 16:06:54.004][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:54.008][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2024-12-07 16:06:54.015][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2024-12-07 16:06:54.020][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2024-12-07 16:06:54.023][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:54.026][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:54.029][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:54.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:54.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:54.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:54.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:54.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:54.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:54.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:54.055][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.067][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:54.068][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:54.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.077][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:54.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:54.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:54.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:54.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.089][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:54.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:54.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:54.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:54.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:54.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:54.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:54.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:54.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.105][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:54.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:54.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:54.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:54.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.120][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:54.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:54.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.128][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:54.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:54.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.135][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:54.136][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:54.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:54.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:54.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:54.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:54.187][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2024-12-07 16:06:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:54.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:54.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:54.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:54.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:54.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:54.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:54.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:54.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:54.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:54.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:54.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:54.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:54.208][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2024-12-07 16:06:54.209][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:54.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2024-12-07 16:06:54.212][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:54.213][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:54.213][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:54.214][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:54.215][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:54.216][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:54.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:54.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:54.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:54.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:54.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:54.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:54.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:54.228][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2024-12-07 16:06:54.230][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:54.231][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:54.232][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2024-12-07 16:06:54.596][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2024-12-07 16:06:54.962][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:54.966][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2024-12-07 16:06:54.971][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2024-12-07 16:06:54.975][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2024-12-07 16:06:54.978][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:54.980][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:54.982][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:54.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:54.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:54.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:54.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:54.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:54.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:55.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:55.003][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.016][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:55.017][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:55.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.021][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.026][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:55.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:55.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:55.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:55.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:55.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:55.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:55.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:55.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.051][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:55.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:55.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.065][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:55.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:55.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:55.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:55.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:55.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:55.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:55.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:55.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:55.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.088][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:55.089][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:55.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.092][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:55.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:55.097][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:55.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:55.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:55.138][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2024-12-07 16:06:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:55.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:55.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:55.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:55.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:55.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:55.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:55.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:55.159][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2024-12-07 16:06:55.160][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:55.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2024-12-07 16:06:55.163][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:55.163][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:55.164][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:55.165][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:55.166][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:55.167][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:55.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:55.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:55.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:55.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:55.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:55.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:55.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:55.178][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2024-12-07 16:06:55.181][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:55.182][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:55.183][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2024-12-07 16:06:55.548][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2024-12-07 16:06:55.912][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:55.916][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2024-12-07 16:06:55.921][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2024-12-07 16:06:55.925][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2024-12-07 16:06:55.928][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:55.930][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:55.932][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:55.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:55.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:55.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:55.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:55.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:55.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:55.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:55.954][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:55.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:55.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.976][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:55.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:55.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:55.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:55.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:55.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:55.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:55.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:55.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:55.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:55.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:55.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:56.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:56.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.003][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:56.009][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:56.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.012][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:56.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:56.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:56.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:56.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:56.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:56.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.026][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:56.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:56.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:56.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.034][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:56.035][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:56.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:56.042][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:56.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:56.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:56.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:56.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:56.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:56.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:56.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:56.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:56.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:56.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:56.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:56.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:56.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:56.084][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2024-12-07 16:06:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:56.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:56.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:56.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:56.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:56.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:56.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:56.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:56.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:56.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:56.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:56.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:56.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:56.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:56.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:56.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:56.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:56.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:56.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:56.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:56.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:56.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:56.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:56.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:56.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:56.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:56.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:56.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:56.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:56.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:56.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:56.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:56.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:56.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:56.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:56.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:56.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:56.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:56.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:56.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:56.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:56.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:56.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:56.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:56.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:56.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:56.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:56.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:56.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:56.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:56.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:56.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:56.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:56.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:56.228][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2024-12-07 16:06:56.229][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:56.230][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2024-12-07 16:06:56.231][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:56.232][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:56.233][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:56.234][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:56.235][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:56.236][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:56.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:56.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:56.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:56.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:56.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:56.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:56.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:56.247][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2024-12-07 16:06:56.250][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:56.251][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:56.252][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2024-12-07 16:06:56.619][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2024-12-07 16:06:56.984][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:56.989][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2024-12-07 16:06:56.996][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2024-12-07 16:06:57.001][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2024-12-07 16:06:57.004][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:57.007][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:57.024][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:57.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:57.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:57.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:57.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:57.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:57.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:57.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:57.047][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.057][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:57.058][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:57.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.062][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:57.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:57.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.066][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:57.068][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:57.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:57.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:57.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:57.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.082][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:57.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:57.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:57.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.090][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:57.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:57.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.094][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:57.095][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:57.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:57.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:57.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.108][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:57.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:57.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:57.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.116][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:57.117][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:57.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:57.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:57.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:57.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:57.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:57.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:57.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:57.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:57.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:57.166][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2024-12-07 16:06:57.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:57.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:57.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:57.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:57.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:57.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:57.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:57.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:57.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:57.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:57.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:57.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:57.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:57.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:57.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:57.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:57.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:57.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:57.212][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2024-12-07 16:06:57.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:57.215][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2024-12-07 16:06:57.216][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:57.217][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:57.218][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:57.219][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:57.220][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:57.221][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:57.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:57.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:57.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:57.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:57.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:57.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:57.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:57.232][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2024-12-07 16:06:57.234][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:57.235][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:57.236][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2024-12-07 16:06:57.602][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2024-12-07 16:06:57.969][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:57.973][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2024-12-07 16:06:57.980][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2024-12-07 16:06:57.985][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2024-12-07 16:06:57.988][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:57.991][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:57.993][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:57.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:57.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:58.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:58.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:58.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:58.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:58.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:58.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.024][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.032][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:58.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:58.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.042][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:58.043][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:58.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:58.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:58.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:58.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:58.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:58.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:58.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.062][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:58.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.067][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:58.068][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:58.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.070][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:58.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:58.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:58.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:58.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.085][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:58.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:58.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:58.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.093][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:58.094][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:58.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.096][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.100][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:58.101][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:58.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:58.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:58.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:58.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:58.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:58.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:58.153][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2024-12-07 16:06:58.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:58.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:58.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:58.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:58.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:58.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:58.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:58.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:58.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:58.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:58.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:58.174][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2024-12-07 16:06:58.174][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:58.176][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2024-12-07 16:06:58.177][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:58.178][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:58.179][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:58.180][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:58.181][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:58.182][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:58.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:58.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:58.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:58.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:58.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:58.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:58.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:58.193][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2024-12-07 16:06:58.195][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:58.196][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:58.198][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2024-12-07 16:06:58.563][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2024-12-07 16:06:58.940][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:58.944][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2024-12-07 16:06:58.951][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2024-12-07 16:06:58.957][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2024-12-07 16:06:58.959][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:58.962][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:58.965][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:58.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:58.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:58.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:58.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:58.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:58.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:58.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:06:58.991][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:58.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:58.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:58.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:58.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.003][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:59.005][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:59.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:06:59.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:06:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.014][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:59.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:59.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.017][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:06:59.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:06:59.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:59.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:59.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:06:59.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:06:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:59.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:59.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:06:59.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:06:59.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.047][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:59.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:06:59.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.052][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:59.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:59.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:06:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.059][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:59.060][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:59.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.062][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:06:59.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.066][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:59.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:59.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:06:59.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:06:59.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.074][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:59.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:59.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:06:59.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:06:59.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:59.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:59.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:06:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:06:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:59.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:59.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:59.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:06:59.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:06:59.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:59.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:59.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:59.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:59.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:59.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:59.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:59.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:59.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:06:59.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:06:59.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:59.124][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2024-12-07 16:06:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:59.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:59.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:06:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:59.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:06:59.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:06:59.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:06:59.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:59.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:59.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:59.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:59.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:59.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:59.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:59.145][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2024-12-07 16:06:59.146][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:06:59.147][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2024-12-07 16:06:59.148][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:06:59.149][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:06:59.150][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:06:59.151][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:06:59.152][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:06:59.153][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:06:59.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:59.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:59.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:59.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:59.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:59.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:59.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:06:59.165][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2024-12-07 16:06:59.167][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:06:59.168][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:06:59.169][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2024-12-07 16:06:59.536][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2024-12-07 16:06:59.940][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:06:59.944][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2024-12-07 16:06:59.951][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2024-12-07 16:06:59.956][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2024-12-07 16:06:59.959][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:06:59.962][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:06:59.965][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:06:59.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:06:59.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:06:59.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:06:59.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:06:59.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:06:59.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:06:59.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:00.002][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.013][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:00.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:00.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.016][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.017][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:00.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:00.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.022][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:00.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:00.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:00.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:00.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:00.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:00.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.038][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:00.039][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:00.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:00.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.045][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:00.046][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:00.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.049][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:00.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:00.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.052][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:00.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:00.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:00.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:00.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:00.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.063][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:00.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:00.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:00.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.071][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:00.072][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:00.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:00.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:00.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:00.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:00.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:00.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:00.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:00.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:00.121][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2024-12-07 16:07:00.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:00.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:00.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:00.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:00.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:00.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:00.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:00.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:00.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:00.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:00.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:00.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:00.143][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2024-12-07 16:07:00.144][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:00.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2024-12-07 16:07:00.151][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:00.153][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:00.154][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:00.155][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:00.156][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:00.157][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:00.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:00.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:00.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:00.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:00.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:00.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:00.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:00.169][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2024-12-07 16:07:00.171][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:00.172][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:00.173][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2024-12-07 16:07:00.540][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2024-12-07 16:07:00.917][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:00.920][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2024-12-07 16:07:00.925][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2024-12-07 16:07:00.930][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2024-12-07 16:07:00.932][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:00.934][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:00.936][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:00.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:00.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:00.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:00.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:00.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:00.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:00.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:00.958][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.959][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.962][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:00.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:00.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.970][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:00.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:00.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.975][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:00.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:00.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.980][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:00.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:00.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:00.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:00.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:00.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:00.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:00.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:00.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:00.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:00.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:00.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:00.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.000][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:01.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:01.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.005][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:01.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:01.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.007][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.008][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:01.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.012][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:01.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:01.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:01.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:01.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:01.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.023][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:01.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:01.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:01.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:01.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.031][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:01.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:01.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:01.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:01.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:01.039][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:01.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.041][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:01.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:01.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:01.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:01.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:01.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:01.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:01.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:01.092][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2024-12-07 16:07:01.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:01.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:01.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:01.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:01.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:01.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:01.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:01.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:01.113][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2024-12-07 16:07:01.114][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:01.115][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2024-12-07 16:07:01.116][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:01.117][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:01.118][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:01.119][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:01.120][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:01.121][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:01.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:01.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:01.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:01.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:01.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:01.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:01.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:01.133][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2024-12-07 16:07:01.135][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:01.136][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:01.137][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2024-12-07 16:07:01.501][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2024-12-07 16:07:01.869][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:01.873][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2024-12-07 16:07:01.880][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2024-12-07 16:07:01.885][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2024-12-07 16:07:01.888][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:01.891][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:01.894][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:01.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:01.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:01.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:01.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:01.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:01.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:01.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:01.920][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:01.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:01.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.932][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:01.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:01.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:01.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:01.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.942][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:01.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:01.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.947][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:01.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:01.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:01.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:01.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:01.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:01.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:01.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:01.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.963][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:01.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.967][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:01.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:01.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.971][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:01.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.974][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.975][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:01.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:01.980][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:01.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.986][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:01.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:01.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:01.997][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:01.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:02.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:02.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.003][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:02.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:02.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:02.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:02.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:02.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.013][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:02.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:02.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:02.054][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2024-12-07 16:07:02.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:02.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:02.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:02.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:02.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:02.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:02.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:02.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:02.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:02.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:02.075][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2024-12-07 16:07:02.076][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:02.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2024-12-07 16:07:02.078][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:02.079][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:02.080][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:02.081][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:02.082][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:02.083][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:02.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:02.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:02.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:02.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:02.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:02.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:02.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:02.094][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2024-12-07 16:07:02.097][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:02.098][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:02.099][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2024-12-07 16:07:02.460][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2024-12-07 16:07:02.829][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:02.833][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2024-12-07 16:07:02.840][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2024-12-07 16:07:02.845][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2024-12-07 16:07:02.848][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:02.850][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:02.852][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:02.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:02.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:02.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:02.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:02.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:02.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:02.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:02.877][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.889][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:02.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:02.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.900][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:02.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:02.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:02.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:02.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:02.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:02.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:02.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:02.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.933][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:02.934][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:02.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.937][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:02.938][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:02.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.941][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:02.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:02.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:02.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:02.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:02.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.952][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:02.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:02.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.955][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:02.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.959][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:02.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:02.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.962][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.967][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:02.968][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:02.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.969][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:02.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:02.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:02.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:03.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:03.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:03.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:03.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.010][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2024-12-07 16:07:03.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.042][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:03.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.067][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.068][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.069][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.074][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.078][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.079][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:07:03.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.113][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.125][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:07:03.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.159][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.160][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.170][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.175][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:07:03.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:03.188][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:03.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:03.222][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:03.224][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:03.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2024-12-07 16:07:03.227][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:03.228][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2024-12-07 16:07:03.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:03.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.329][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.343][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.344][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.364][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:07:03.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.382][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.388][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.389][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.390][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.392][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.394][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.397][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.398][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2024-12-07 16:07:03.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.428][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.439][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.444][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2024-12-07 16:07:03.457][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:03.457][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:03.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:03.470][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:03.473][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:03.474][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2024-12-07 16:07:03.475][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:03.476][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2024-12-07 16:07:03.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.624][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:03.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.643][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.648][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.649][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.655][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.660][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.665][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.677][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2024-12-07 16:07:03.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.694][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.695][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.696][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.697][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.706][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.709][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.710][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.722][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2024-12-07 16:07:03.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.740][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.740][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.752][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.756][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.768][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2024-12-07 16:07:03.769][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:03.770][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:03.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:03.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:03.786][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:03.787][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2024-12-07 16:07:03.788][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:03.789][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2024-12-07 16:07:03.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.838][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:03.841][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:03.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2024-12-07 16:07:03.843][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:03.844][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2024-12-07 16:07:03.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:03.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:03.906][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:03.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.925][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.926][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.936][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.937][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2024-12-07 16:07:03.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:03.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:03.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:03.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:03.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:03.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:03.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:03.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.977][private$selectFields]
biodb.TRACE[2024-12-07 16:07:03.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:03.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:03.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:03.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.993][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:03.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:03.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:03.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2024-12-07 16:07:04.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.022][private$selectFields]
biodb.TRACE[2024-12-07 16:07:04.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:04.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:04.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.032][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.034][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.038][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2024-12-07 16:07:04.051][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:04.052][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:04.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:04.079][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:04.081][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:04.083][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:07:04.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:04.085][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:07:04.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.113][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:04.116][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:04.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:07:04.118][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:04.119][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:07:04.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.161][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:04.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.180][private$selectFields]
biodb.TRACE[2024-12-07 16:07:04.181][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:04.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:04.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.191][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.196][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:04.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-12-07 16:07:04.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.226][private$selectFields]
biodb.TRACE[2024-12-07 16:07:04.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:04.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:04.229][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.242][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.244][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:04.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:07:04.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.278][private$selectFields]
biodb.TRACE[2024-12-07 16:07:04.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:04.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:04.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.288][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.294][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:04.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.306][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-12-07 16:07:04.307][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:04.308][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:04.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:04.320][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:04.323][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:04.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:07:04.325][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:04.326][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:07:04.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.369][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:04.372][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:04.373][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:07:04.374][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:04.375][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:07:04.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.596][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:04.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.613][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.614][private$selectFields]
biodb.TRACE[2024-12-07 16:07:04.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:04.615][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:04.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.625][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.628][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.629][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:04.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:07:04.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.659][private$selectFields]
biodb.TRACE[2024-12-07 16:07:04.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:04.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:04.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.665][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.675][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:04.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.687][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:07:04.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.706][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.707][private$selectFields]
biodb.TRACE[2024-12-07 16:07:04.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:04.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:04.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.720][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:04.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.725][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:04.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:04.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:07:04.740][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:04.742][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:04.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:04.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:04.759][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:04.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:07:04.762][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:04.763][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:07:04.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.941][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:04.944][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:04.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:07:04.946][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:04.948][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:07:04.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:04.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:04.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:04.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:04.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:04.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:04.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:04.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:04.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.009][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:05.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.028][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.029][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.034][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.040][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.041][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.042][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.044][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:07:05.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.075][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.086][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.091][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:07:05.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.121][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.127][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.133][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.137][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:07:05.154][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:05.155][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:05.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:05.181][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:05.184][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:05.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2024-12-07 16:07:05.186][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:05.187][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2024-12-07 16:07:05.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.306][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:05.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.324][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.336][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.340][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:07:05.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.371][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.382][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.387][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.399][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2024-12-07 16:07:05.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.416][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.417][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.418][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.423][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.428][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.429][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.433][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.449][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2024-12-07 16:07:05.450][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:05.451][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:05.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:05.463][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:05.466][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:05.467][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2024-12-07 16:07:05.468][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:05.470][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2024-12-07 16:07:05.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.532][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:05.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.551][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.562][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.566][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:07:05.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.597][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.607][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.608][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.612][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.613][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:07:05.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.642][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.643][private$selectFields]
biodb.TRACE[2024-12-07 16:07:05.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:05.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:05.646][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.650][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.651][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.655][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:05.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.658][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.659][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:05.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2024-12-07 16:07:05.672][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:05.673][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:05.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:05.685][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:05.688][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:05.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2024-12-07 16:07:05.690][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:05.692][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2024-12-07 16:07:05.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:05.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:05.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:05.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:05.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:05.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:05.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:05.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:05.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:05.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:05.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:06.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.256][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:06.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.275][private$selectFields]
biodb.TRACE[2024-12-07 16:07:06.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:06.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:06.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.281][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.284][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.286][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.291][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:06.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:07:06.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.325][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.326][private$selectFields]
biodb.TRACE[2024-12-07 16:07:06.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:06.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:06.328][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.329][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.330][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.332][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.337][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.341][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:06.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2024-12-07 16:07:06.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:06.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.370][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.371][private$selectFields]
biodb.TRACE[2024-12-07 16:07:06.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:06.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:06.374][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.382][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:06.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.386][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.387][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:06.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2024-12-07 16:07:06.399][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:06.400][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:07:06.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:06.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:06.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:06.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:06.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:06.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:06.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:06.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:06.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:06.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:06.470][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:06.473][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:06.474][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:06.476][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:07:06.867][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:07:07.500][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:07.505][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2024-12-07 16:07:07.513][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2024-12-07 16:07:07.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:07.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:07.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:07.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:07.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:07.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:07.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:07.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:07.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:07.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:07.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:07.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:07.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:07.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:07.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:07.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:07.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:07.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:07.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:07.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:07.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:07.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:07.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:07.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:07.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:07.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:07.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:07.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:07.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:07.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:07.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:07.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:07.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:07.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:07.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:07.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:07.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:07.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:07.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:07.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:07.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:07.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:07.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:07.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:07.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:07.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:07.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:07.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:07.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:07.658][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2024-12-07 16:07:07.659][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:07.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2024-12-07 16:07:07.670][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:07.671][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:07.672][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:07.673][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:07.674][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:07.675][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:07.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:07.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:07.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:07.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:07.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:07.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:07.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:07.686][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2024-12-07 16:07:07.688][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:07.689][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:07.691][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2024-12-07 16:07:08.055][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2024-12-07 16:07:08.433][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:08.436][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2024-12-07 16:07:08.442][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2024-12-07 16:07:08.446][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2024-12-07 16:07:08.448][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:08.450][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:08.452][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:08.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:08.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:08.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:08.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:08.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:08.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:08.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:08.474][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.476][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.486][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:08.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:08.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:08.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:08.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.497][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:08.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:08.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:08.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:08.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:08.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:08.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:08.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:08.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.514][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:08.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:08.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:08.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:08.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.521][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:08.522][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:08.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.525][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:08.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:08.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.528][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:08.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:08.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.532][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:08.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.543][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:08.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:08.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.546][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:08.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.551][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:08.552][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:08.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:08.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:08.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:08.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:08.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:08.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:08.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:08.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:08.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:08.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:08.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:08.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:08.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:08.602][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2024-12-07 16:07:08.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:08.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:08.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:08.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:08.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:08.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:08.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:08.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:08.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:08.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:08.623][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2024-12-07 16:07:08.624][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:08.625][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2024-12-07 16:07:08.626][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:08.627][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:08.628][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:08.629][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:08.630][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:08.631][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:08.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:08.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:08.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:08.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:08.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:08.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:08.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:08.643][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2024-12-07 16:07:08.645][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:08.646][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:08.647][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2024-12-07 16:07:09.009][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2024-12-07 16:07:09.376][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:09.380][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2024-12-07 16:07:09.388][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2024-12-07 16:07:09.393][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2024-12-07 16:07:09.396][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:09.399][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:09.401][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:09.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:09.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:09.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:09.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:09.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:09.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:09.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:09.427][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.439][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:09.440][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:09.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.442][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:09.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.449][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:09.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:09.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:09.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:09.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:09.459][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:09.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.461][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:09.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:09.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:09.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:09.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:09.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:09.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:09.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:09.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:09.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:09.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.481][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:09.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:09.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.485][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:09.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:09.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.507][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:09.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:09.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.509][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:09.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:09.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.514][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:09.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:09.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.518][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:09.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:09.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:09.523][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:09.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:09.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:09.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:09.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:09.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:09.565][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2024-12-07 16:07:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:09.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:09.577][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:09.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:09.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:09.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:09.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:09.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:09.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:09.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:09.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.595][private$selectFields]
biodb.TRACE[2024-12-07 16:07:09.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:09.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:09.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.605][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.607][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.611][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:09.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:07:09.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:09.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:09.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:09.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:09.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:09.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:09.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.642][private$selectFields]
biodb.TRACE[2024-12-07 16:07:09.643][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:09.644][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:09.644][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.653][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.658][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:09.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.670][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:07:09.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:09.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:09.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:09.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:09.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:09.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:09.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.689][private$selectFields]
biodb.TRACE[2024-12-07 16:07:09.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:09.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:09.691][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.700][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:09.701][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.705][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:09.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:09.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:09.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:09.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-12-07 16:07:09.718][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:09.719][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:09.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:09.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:09.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:09.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:09.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:09.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:09.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:09.731][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:09.734][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:09.735][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:09.737][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:07:10.137][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:07:10.860][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:10.864][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2024-12-07 16:07:10.872][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2024-12-07 16:07:10.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:10.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:10.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:10.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:10.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:10.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:10.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:10.907][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2024-12-07 16:07:10.908][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:10.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2024-12-07 16:07:10.913][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:10.915][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:10.916][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:10.918][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:10.919][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:10.920][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:10.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:10.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:10.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:10.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:10.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:10.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:10.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:10.936][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2024-12-07 16:07:10.938][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:10.939][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:10.941][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2024-12-07 16:07:11.313][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2024-12-07 16:07:11.688][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:11.693][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2024-12-07 16:07:11.719][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2024-12-07 16:07:11.724][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2024-12-07 16:07:11.727][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:11.730][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:11.732][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:11.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:11.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:11.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:11.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:11.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:11.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:11.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:11.752][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.756][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.763][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:11.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:11.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.766][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:11.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.771][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:11.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:11.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:11.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:11.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:11.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:11.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:11.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:11.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.787][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:11.788][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:11.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:11.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:11.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:11.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:11.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.797][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.798][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:11.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:11.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.801][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:11.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:11.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:11.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:11.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.809][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.811][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.816][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:11.817][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:11.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.818][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:11.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:11.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.823][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:11.824][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:11.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.827][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:11.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:11.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.830][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:11.831][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:11.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.834][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:11.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:11.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:11.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:11.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:11.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:11.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:11.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:11.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:11.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:11.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:11.873][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2024-12-07 16:07:11.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:11.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:11.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:11.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:11.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:11.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:11.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:11.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:11.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:11.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:11.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:11.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:11.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:11.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:11.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:11.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:11.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:11.914][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2024-12-07 16:07:11.915][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:11.917][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2024-12-07 16:07:11.918][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:11.919][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:11.920][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:11.921][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:11.922][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:11.922][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:11.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:11.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:11.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:11.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:11.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:11.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:11.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:11.934][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2024-12-07 16:07:11.936][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:11.937][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:11.938][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2024-12-07 16:07:12.311][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2024-12-07 16:07:12.775][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:12.779][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2024-12-07 16:07:12.784][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2024-12-07 16:07:12.788][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2024-12-07 16:07:12.790][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:12.792][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:12.794][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:12.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:12.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:12.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:12.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:12.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:12.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:12.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:12.814][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.819][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.827][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:12.828][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:12.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.832][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:12.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:12.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.837][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:12.838][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:12.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:12.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:12.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.849][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:12.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:12.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:12.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.862][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:12.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:12.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:12.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.869][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:12.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:12.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.884][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:12.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:12.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.887][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:12.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:12.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.899][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:12.900][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:12.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.902][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.903][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:12.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:12.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.906][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:12.907][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:12.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:12.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:12.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:12.949][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2024-12-07 16:07:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:12.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:12.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:12.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:12.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:12.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:12.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:12.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:12.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:12.981][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:12.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:12.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:12.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:12.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:12.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:12.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:12.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:12.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:12.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:12.999][private$selectFields]
biodb.TRACE[2024-12-07 16:07:13.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:13.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:13.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.010][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.014][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:13.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.027][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-12-07 16:07:13.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:13.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:13.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:13.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:13.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:13.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:13.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:13.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.045][private$selectFields]
biodb.TRACE[2024-12-07 16:07:13.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:13.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:13.047][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.056][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:13.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.072][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:07:13.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:13.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:13.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:13.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:13.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:13.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:13.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:13.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.090][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.091][private$selectFields]
biodb.TRACE[2024-12-07 16:07:13.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:13.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:13.093][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.094][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.102][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:13.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.106][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:13.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:13.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:13.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:13.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:07:13.119][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:13.120][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:13.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:13.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:13.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:13.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:13.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:13.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:13.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:13.132][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:13.135][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:13.136][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:13.138][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:07:13.511][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:07:13.877][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:13.882][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2024-12-07 16:07:13.890][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2024-12-07 16:07:13.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:13.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:13.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:13.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:13.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:13.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:13.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:13.917][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2024-12-07 16:07:13.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:13.923][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2024-12-07 16:07:13.925][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:13.927][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:13.929][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:13.930][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:13.932][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:13.933][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:13.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:13.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:13.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:13.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:13.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:13.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:13.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:13.950][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2024-12-07 16:07:13.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:13.963][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:13.964][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2024-12-07 16:07:14.335][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2024-12-07 16:07:14.705][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:14.709][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2024-12-07 16:07:14.716][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2024-12-07 16:07:14.721][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2024-12-07 16:07:14.724][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:14.727][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:14.729][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:14.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:14.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:14.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:14.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:14.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:14.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:14.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:14.756][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.760][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.768][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:14.769][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:14.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.778][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:14.780][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:14.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:14.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:14.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:14.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:14.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.790][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:14.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:14.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.803][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:14.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:14.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.806][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:14.807][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:14.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.810][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:14.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:14.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.821][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:14.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:14.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:14.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:14.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.828][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:14.829][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:14.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:14.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:14.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:14.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:14.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:14.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:14.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:14.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:14.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:14.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:14.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:14.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:14.879][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2024-12-07 16:07:14.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:14.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:14.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:14.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:14.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:14.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:14.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:14.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:14.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:14.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:14.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:14.900][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2024-12-07 16:07:14.901][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:14.902][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2024-12-07 16:07:14.903][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:14.904][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:14.905][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:14.906][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:14.907][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:14.908][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:14.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:14.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:14.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:14.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:14.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:14.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:14.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:14.920][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2024-12-07 16:07:14.922][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:14.923][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:14.924][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2024-12-07 16:07:15.288][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2024-12-07 16:07:15.654][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:15.659][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2024-12-07 16:07:15.666][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2024-12-07 16:07:15.671][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2024-12-07 16:07:15.674][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:15.677][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:15.679][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:15.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:15.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:15.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:15.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:15.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:15.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:15.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:15.705][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.710][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.718][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:15.719][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:15.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.723][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:15.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:15.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.728][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:15.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:15.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.732][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.737][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:15.738][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:15.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.740][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:15.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:15.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:15.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:15.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:15.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:15.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.753][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:15.754][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:15.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.756][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.757][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:15.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:15.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.760][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:15.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.765][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.771][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:15.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:15.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.779][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:15.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:15.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:15.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:15.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:15.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:15.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:15.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:15.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:15.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:15.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:15.841][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2024-12-07 16:07:15.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:15.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:15.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:15.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:15.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:15.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:15.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:15.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:15.861][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2024-12-07 16:07:15.862][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:15.864][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2024-12-07 16:07:15.865][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:15.866][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:15.867][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:15.868][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:15.869][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:15.869][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:15.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:15.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:15.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:15.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:15.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:15.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:15.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:15.881][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2024-12-07 16:07:15.883][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:15.884][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:15.885][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2024-12-07 16:07:16.249][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2024-12-07 16:07:16.623][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:16.627][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2024-12-07 16:07:16.634][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2024-12-07 16:07:16.639][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2024-12-07 16:07:16.642][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:16.645][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:16.647][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:16.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:16.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:16.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:16.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:16.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:16.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:16.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:16.673][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.686][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:16.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:16.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:16.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:16.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.696][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:16.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:16.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:16.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:16.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:16.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:16.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:16.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:16.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:16.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:16.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.721][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:16.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:16.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.725][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:16.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:16.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.728][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:16.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:16.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.739][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:16.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:16.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.742][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:16.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:16.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.747][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:16.748][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:16.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:16.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:16.755][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:16.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:16.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:16.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:16.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:16.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:16.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:16.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:16.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:16.798][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2024-12-07 16:07:16.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:16.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:16.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:16.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:16.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:16.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:16.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:16.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:16.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:16.818][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2024-12-07 16:07:16.819][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:16.821][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2024-12-07 16:07:16.822][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:16.823][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:16.824][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:16.825][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:16.826][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:16.827][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:16.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:16.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:16.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:16.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:16.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:16.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:16.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:16.838][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2024-12-07 16:07:16.841][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:16.841][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:16.843][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2024-12-07 16:07:17.208][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2024-12-07 16:07:17.576][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:17.580][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2024-12-07 16:07:17.587][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2024-12-07 16:07:17.592][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2024-12-07 16:07:17.595][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:17.598][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:17.600][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:17.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:17.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:17.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:17.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:17.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:17.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:17.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:17.640][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.641][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.644][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.650][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:17.651][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:17.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:17.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.659][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:17.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:17.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:17.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:17.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:17.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:17.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.669][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:17.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:17.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:17.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:17.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.676][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.681][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:17.682][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:17.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:17.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.688][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:17.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:17.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.692][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:17.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.698][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:17.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:17.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:17.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:17.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:17.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:17.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:17.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:17.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:17.761][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2024-12-07 16:07:17.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:17.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:17.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:17.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:17.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:17.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:17.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:17.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:17.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:17.792][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:17.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:17.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:17.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:17.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:17.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:17.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:17.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:17.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.811][private$selectFields]
biodb.TRACE[2024-12-07 16:07:17.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:17.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:17.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.818][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.822][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.827][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:17.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.839][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-12-07 16:07:17.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:17.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:17.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:17.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:17.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:17.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:17.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.857][private$selectFields]
biodb.TRACE[2024-12-07 16:07:17.858][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:17.859][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:17.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.868][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.869][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.870][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.873][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-12-07 16:07:17.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:17.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:17.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:17.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:17.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:17.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:17.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:17.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.903][private$selectFields]
biodb.TRACE[2024-12-07 16:07:17.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:17.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:17.906][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.915][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:17.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.919][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-12-07 16:07:17.936][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:17.937][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:17.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:17.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:17.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:17.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:17.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:17.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:17.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:17.964][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:17.967][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:17.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:07:17.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:17.970][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:07:17.973][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:17.975][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:17.976][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:07:17.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:17.979][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:07:17.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:17.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:17.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:17.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:17.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:17.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:17.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:17.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.039][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:18.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.057][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.061][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.064][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.065][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.068][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.069][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.073][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:07:18.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.103][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.109][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.113][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.114][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.119][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:07:18.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.149][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.159][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.160][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.165][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:07:18.177][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:18.178][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:18.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:18.190][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:18.193][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:18.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:07:18.195][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:18.197][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:07:18.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.261][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:18.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.279][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.282][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.290][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.290][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.295][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.307][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:07:18.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.324][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.325][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.326][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.335][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.340][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:07:18.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.369][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.373][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.379][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.381][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.385][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:07:18.398][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:18.399][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:18.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:18.411][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:18.414][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:18.415][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:07:18.416][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:18.418][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:07:18.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:18.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:18.479][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:18.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.502][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.503][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.513][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.516][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.517][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:07:18.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.547][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.547][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.548][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.553][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.558][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.562][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:07:18.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:18.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.591][private$selectFields]
biodb.TRACE[2024-12-07 16:07:18.592][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:18.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:18.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.597][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.603][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:18.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.604][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.606][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.607][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:18.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:18.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:18.619][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-12-07 16:07:18.620][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:18.620][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:18.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:18.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:18.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:18.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:18.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:18.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:18.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:18.647][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:18.649][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:18.650][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:18.652][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:07:19.023][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:07:19.387][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:19.392][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2024-12-07 16:07:19.399][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2024-12-07 16:07:19.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:19.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:19.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:19.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:19.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:19.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:19.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:19.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:19.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:19.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:19.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:19.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:19.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:19.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:19.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:19.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:19.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:19.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:19.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:19.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:19.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:19.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:19.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:19.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:19.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:19.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:19.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:19.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:19.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:19.480][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2024-12-07 16:07:19.481][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:19.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2024-12-07 16:07:19.484][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:19.485][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:19.486][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:19.487][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:19.488][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:19.488][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:19.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:19.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:19.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:19.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:19.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:19.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:19.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:19.500][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2024-12-07 16:07:19.502][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:19.503][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:19.504][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2024-12-07 16:07:19.866][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2024-12-07 16:07:20.234][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:20.239][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2024-12-07 16:07:20.245][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2024-12-07 16:07:20.251][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2024-12-07 16:07:20.254][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:20.257][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:20.259][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:20.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:20.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:20.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:20.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:20.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:20.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:20.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:20.285][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.298][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:20.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:20.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.308][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:20.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:20.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.312][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:20.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:20.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:20.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:20.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.336][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:20.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:20.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:20.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:20.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.343][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:20.344][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:20.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:20.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:20.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.350][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:20.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:20.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.353][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.354][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:20.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:20.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.360][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.365][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:20.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:20.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:20.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:20.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:20.373][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:20.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.375][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:20.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:20.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:20.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.382][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:20.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:20.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:20.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:20.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:20.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:20.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:20.422][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2024-12-07 16:07:20.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:20.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:20.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:20.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:20.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:20.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:20.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:20.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:20.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:20.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:20.443][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2024-12-07 16:07:20.444][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:20.445][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2024-12-07 16:07:20.446][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:20.447][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:20.448][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:20.449][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:20.450][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:20.451][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:20.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:20.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:20.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:20.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:20.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:20.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:20.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:20.463][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2024-12-07 16:07:20.465][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:20.466][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:20.467][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2024-12-07 16:07:20.840][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2024-12-07 16:07:21.207][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:21.212][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2024-12-07 16:07:21.218][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2024-12-07 16:07:21.223][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2024-12-07 16:07:21.225][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:21.228][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:21.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:21.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:21.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:21.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:21.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:21.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:21.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:21.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:21.247][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.255][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:21.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:21.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:21.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:21.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.262][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:21.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:21.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.266][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:21.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:21.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:21.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:21.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.277][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:21.278][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:21.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:21.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:21.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:21.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:21.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:21.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:21.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.292][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:21.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:21.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:21.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.299][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.306][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:21.307][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:21.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.309][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:21.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.314][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:21.315][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:21.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.318][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.321][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:21.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:21.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:21.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:21.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:21.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:21.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:21.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:21.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:21.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:21.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:21.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:21.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:21.365][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2024-12-07 16:07:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:21.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:21.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:21.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:21.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:21.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:21.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:21.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:21.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:21.394][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2024-12-07 16:07:21.394][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:21.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2024-12-07 16:07:21.397][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:21.398][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:21.399][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:21.400][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:21.401][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:21.402][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:21.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:21.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:21.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:21.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:21.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:21.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:21.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:21.413][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2024-12-07 16:07:21.415][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:21.416][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:21.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2024-12-07 16:07:21.784][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2024-12-07 16:07:22.157][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:22.161][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2024-12-07 16:07:22.168][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2024-12-07 16:07:22.173][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2024-12-07 16:07:22.176][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:22.178][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:22.181][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:22.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:22.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:22.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:22.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:22.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:22.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:22.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:22.206][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.219][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:22.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:22.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:22.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:22.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.229][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:22.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:22.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:22.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:22.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:22.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:22.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:22.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:22.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:22.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:22.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:22.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:22.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:22.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:22.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.256][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:22.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:22.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.260][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:22.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:22.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:22.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:22.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.267][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.270][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.275][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:22.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:22.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:22.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:22.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.282][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:22.283][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:22.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.286][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:22.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:22.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.290][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:22.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:22.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:22.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:22.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:22.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:22.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:22.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:22.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:22.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:22.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:22.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:22.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:22.333][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2024-12-07 16:07:22.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:22.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:22.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:22.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:22.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:22.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:22.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:22.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:22.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:22.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:22.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:22.354][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2024-12-07 16:07:22.355][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:22.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2024-12-07 16:07:22.357][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:22.358][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:22.359][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:22.360][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:22.361][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:22.362][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:22.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:22.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:22.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:22.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:22.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:22.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:22.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:22.373][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2024-12-07 16:07:22.376][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:22.377][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:22.378][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2024-12-07 16:07:22.740][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2024-12-07 16:07:23.109][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:23.113][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2024-12-07 16:07:23.120][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2024-12-07 16:07:23.126][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2024-12-07 16:07:23.129][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:23.131][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:23.134][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:23.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:23.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:23.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:23.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:23.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:23.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:23.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:23.160][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.173][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:23.174][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:23.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.177][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:23.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.184][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:23.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:23.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.187][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:23.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:23.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:23.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:23.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:23.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:23.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:23.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:23.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:23.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.231][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:23.232][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:23.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.242][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.247][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:23.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:23.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.249][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.254][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:23.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:23.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:23.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:23.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:23.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:23.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:23.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:23.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:23.307][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2024-12-07 16:07:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:23.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:23.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:23.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:23.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:23.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:23.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:23.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:23.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:23.329][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2024-12-07 16:07:23.330][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:23.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2024-12-07 16:07:23.333][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:23.334][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:23.335][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:23.336][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:23.337][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:23.338][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:23.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:23.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:23.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:23.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:23.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:23.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:23.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:23.351][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2024-12-07 16:07:23.354][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:23.355][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:23.357][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2024-12-07 16:07:23.729][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2024-12-07 16:07:24.116][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:24.121][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2024-12-07 16:07:24.128][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2024-12-07 16:07:24.133][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2024-12-07 16:07:24.136][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:24.139][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:24.141][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:24.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:24.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:24.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:24.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:24.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:24.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:24.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:24.167][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.172][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.180][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:24.181][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:24.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:24.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.190][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:24.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:24.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:24.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:24.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.199][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:24.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:24.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:24.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.207][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:24.208][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:24.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.210][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:24.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.214][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:24.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:24.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.218][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:24.219][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:24.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.222][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:24.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.228][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.233][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:24.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:24.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:24.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:24.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.241][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:24.241][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:24.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.248][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:24.249][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:24.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:24.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:24.291][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2024-12-07 16:07:24.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:24.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:24.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:24.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:24.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:24.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:24.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:24.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:24.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:24.332][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:24.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:24.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:24.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:24.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:24.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:24.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:24.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:24.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.350][private$selectFields]
biodb.TRACE[2024-12-07 16:07:24.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:24.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:24.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.356][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.361][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.365][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.365][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:24.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:07:24.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:24.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:24.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:24.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:24.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:24.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:24.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:24.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.395][private$selectFields]
biodb.TRACE[2024-12-07 16:07:24.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:24.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:24.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.406][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.410][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.411][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:24.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:07:24.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:24.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:24.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:24.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:24.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:24.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:24.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:24.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.440][private$selectFields]
biodb.TRACE[2024-12-07 16:07:24.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:24.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:24.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.450][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.452][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:24.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.456][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:24.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:24.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:24.468][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:07:24.469][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:24.470][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:24.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:24.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:24.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:24.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:24.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:24.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:24.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:24.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:24.485][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:24.485][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:24.487][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-12-07 16:07:24.958][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-12-07 16:07:25.691][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:25.696][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2024-12-07 16:07:25.704][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2024-12-07 16:07:25.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:25.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:25.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:25.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:25.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:25.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:25.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:25.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:25.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:25.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:25.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:25.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:25.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:25.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:25.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:25.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:25.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:25.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:25.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:25.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:25.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:25.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:25.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:25.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:25.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:25.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:25.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:25.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:25.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:25.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:25.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:25.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:25.792][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2024-12-07 16:07:25.793][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:25.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2024-12-07 16:07:25.796][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:25.797][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:25.798][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:25.799][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:25.800][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:25.801][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:25.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:25.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:25.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:25.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:25.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:25.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:25.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:25.814][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2024-12-07 16:07:25.816][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:25.817][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:25.819][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2024-12-07 16:07:26.181][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2024-12-07 16:07:26.551][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:26.556][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2024-12-07 16:07:26.563][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2024-12-07 16:07:26.568][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2024-12-07 16:07:26.571][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:26.574][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:26.576][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:26.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:26.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:26.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:26.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:26.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:26.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:26.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:26.622][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.625][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.631][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:26.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:26.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:26.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:26.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.639][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:26.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:26.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:26.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:26.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.647][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:26.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:26.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:26.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.654][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:26.655][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:26.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:26.662][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:26.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.665][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:26.665][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:26.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.667][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.668][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:26.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.672][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.679][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:26.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:26.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:26.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:26.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.686][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:26.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:26.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.690][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:26.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.693][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:26.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:26.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:26.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:26.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:26.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:26.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:26.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:26.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:26.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:26.736][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2024-12-07 16:07:26.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:26.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:26.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:26.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:26.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:26.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:26.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:26.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:26.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:26.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:26.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:26.757][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2024-12-07 16:07:26.757][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:26.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2024-12-07 16:07:26.760][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:26.761][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:26.762][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:26.763][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:26.764][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:26.765][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:26.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:26.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:26.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:26.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:26.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:26.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:26.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:26.776][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2024-12-07 16:07:26.778][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:26.779][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:26.780][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2024-12-07 16:07:27.142][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2024-12-07 16:07:27.510][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:27.514][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2024-12-07 16:07:27.521][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2024-12-07 16:07:27.526][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2024-12-07 16:07:27.529][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:27.532][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:27.534][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:27.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:27.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:27.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:27.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:27.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:27.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:27.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:27.560][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.565][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.572][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:27.574][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:27.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:27.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:27.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.583][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:27.584][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:27.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.586][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:27.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:27.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:27.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:27.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.595][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:27.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:27.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:27.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:27.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:27.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.608][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:27.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:27.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.610][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.611][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:27.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:27.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.614][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.621][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.626][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:27.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:27.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.629][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:27.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.633][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:27.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.636][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:27.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:27.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:27.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:27.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.643][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:27.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:27.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:27.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:27.692][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2024-12-07 16:07:27.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:27.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:27.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:27.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:27.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:27.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:27.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:27.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:27.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:27.712][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2024-12-07 16:07:27.713][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:27.715][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2024-12-07 16:07:27.716][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:27.717][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:27.718][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:27.719][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:27.720][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:27.720][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:27.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:27.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:27.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:27.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:27.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:27.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:27.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:27.732][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2024-12-07 16:07:27.734][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:27.735][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:27.736][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2024-12-07 16:07:28.099][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2024-12-07 16:07:28.720][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:28.724][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2024-12-07 16:07:28.731][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2024-12-07 16:07:28.736][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2024-12-07 16:07:28.739][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:28.741][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:28.744][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:28.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:28.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:28.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:28.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:28.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:28.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:28.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:28.769][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.782][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:28.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.786][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.792][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:28.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:28.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:28.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:28.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.804][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:28.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:28.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:28.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.812][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:28.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:28.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.816][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:28.817][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:28.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.819][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.820][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:28.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:28.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:28.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:28.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.835][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:28.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:28.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:28.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.842][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:28.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:28.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:28.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:28.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:28.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:28.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:28.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:28.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:28.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:28.892][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2024-12-07 16:07:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:28.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:28.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:28.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:28.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:28.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:28.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:28.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:28.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:28.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:28.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:28.913][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2024-12-07 16:07:28.913][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:28.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2024-12-07 16:07:28.916][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:28.917][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:28.918][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:28.919][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:28.920][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:28.921][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:28.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:28.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:28.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:28.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:28.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:28.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:28.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:28.932][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2024-12-07 16:07:28.934][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:28.935][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:28.936][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2024-12-07 16:07:29.297][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2024-12-07 16:07:29.929][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:29.934][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2024-12-07 16:07:29.940][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2024-12-07 16:07:29.946][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2024-12-07 16:07:29.948][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:29.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:29.954][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:29.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:29.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:29.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:29.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:29.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:29.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:29.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:29.979][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:29.981][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:29.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:29.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:29.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:29.992][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:29.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:29.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:29.996][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:29.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:30.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.002][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:30.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:30.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:30.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:30.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:30.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:30.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:30.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:30.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:30.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:30.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:30.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.038][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:30.039][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:30.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.040][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.042][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:30.042][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:30.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.044][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:30.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:30.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.051][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.056][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:30.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:30.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.063][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:30.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:30.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:30.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:30.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:30.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:30.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:30.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:30.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:30.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:30.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:30.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:30.113][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2024-12-07 16:07:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:30.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:30.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:30.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:30.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:30.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:30.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:30.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:30.133][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2024-12-07 16:07:30.134][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:30.135][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2024-12-07 16:07:30.136][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:30.137][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:30.138][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:30.139][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:30.140][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:30.141][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:30.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:30.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:30.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:30.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:30.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:30.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:30.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:30.152][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2024-12-07 16:07:30.155][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:30.155][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:30.157][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2024-12-07 16:07:30.519][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2024-12-07 16:07:30.881][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:30.885][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2024-12-07 16:07:30.892][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2024-12-07 16:07:30.897][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2024-12-07 16:07:30.900][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:30.903][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:30.905][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:30.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:30.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:30.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:30.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:30.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:30.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:30.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:30.930][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.932][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:30.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.943][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:30.945][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:30.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.954][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:30.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:30.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:30.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:30.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:30.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:30.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.965][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:30.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:30.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:30.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:30.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:30.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:30.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.981][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:30.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:30.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:30.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:30.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:30.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:30.996][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:30.997][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:30.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:30.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:31.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:31.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.004][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:31.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:31.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:31.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:31.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.013][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:31.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:31.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:31.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:31.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:31.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:31.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:31.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:31.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:31.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:31.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:31.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:31.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:31.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:31.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:31.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:31.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:31.054][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2024-12-07 16:07:31.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:31.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:31.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:31.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:31.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:31.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:31.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:31.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:31.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:31.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:31.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:31.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:31.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:31.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:31.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:31.083][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2024-12-07 16:07:31.084][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:31.085][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2024-12-07 16:07:31.086][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:31.087][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:31.088][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:31.089][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:31.090][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:31.091][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:31.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:31.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:31.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:31.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:31.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:31.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:31.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:31.102][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2024-12-07 16:07:31.104][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:31.105][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:31.107][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2024-12-07 16:07:31.718][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2024-12-07 16:07:32.092][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:32.096][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2024-12-07 16:07:32.103][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2024-12-07 16:07:32.108][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2024-12-07 16:07:32.111][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:32.113][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:32.116][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:32.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:32.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:32.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:32.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:32.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:32.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:32.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:32.142][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.154][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:32.155][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:32.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:32.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:32.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.164][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:32.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:32.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.173][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:32.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:32.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:32.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:32.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:32.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:32.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.188][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:32.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:32.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.191][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.192][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:32.193][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:32.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.195][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.196][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:32.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:32.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.202][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.206][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:32.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:32.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:32.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:32.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.214][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:32.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:32.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:32.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:32.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.224][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:32.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:32.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:32.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:32.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:32.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:32.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:32.264][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2024-12-07 16:07:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:32.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:32.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:32.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:32.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:32.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:32.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:32.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:32.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:32.284][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2024-12-07 16:07:32.285][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:32.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2024-12-07 16:07:32.288][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:32.289][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:32.290][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:32.291][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:32.292][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:32.292][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:32.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:32.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:32.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:32.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:32.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:32.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:32.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:32.304][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2024-12-07 16:07:32.306][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:32.307][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:32.308][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2024-12-07 16:07:32.672][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2024-12-07 16:07:33.036][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:33.039][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2024-12-07 16:07:33.044][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2024-12-07 16:07:33.048][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2024-12-07 16:07:33.051][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:33.053][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:33.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:33.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:33.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:33.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:33.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:33.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:33.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:33.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:33.076][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.081][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.088][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:33.090][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:33.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.099][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:33.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:33.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.102][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:33.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:33.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:33.109][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:33.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:33.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:33.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:33.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:33.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:33.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:33.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.123][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:33.124][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.137][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:33.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:33.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.141][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:33.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:33.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.145][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.146][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.152][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:33.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:33.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:33.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:33.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.160][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:33.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:33.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:33.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:33.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:33.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:33.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:33.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:33.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:33.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:33.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:33.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:33.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:33.209][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2024-12-07 16:07:33.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:33.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:33.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:33.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:33.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:33.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:33.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:33.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:33.229][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2024-12-07 16:07:33.230][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:33.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2024-12-07 16:07:33.233][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:33.234][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:33.235][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:33.235][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:33.236][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:33.237][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:33.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:33.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:33.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:33.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:33.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:33.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:33.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:33.248][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2024-12-07 16:07:33.251][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:33.252][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:33.253][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2024-12-07 16:07:33.614][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2024-12-07 16:07:33.982][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:33.987][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2024-12-07 16:07:33.994][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2024-12-07 16:07:33.999][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2024-12-07 16:07:34.002][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:34.004][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:34.007][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:34.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:34.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:34.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:34.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:34.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:34.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:34.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:34.032][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.037][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.045][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:34.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:34.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.055][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:34.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:34.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:34.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:34.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:34.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:34.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:34.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:34.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:34.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.083][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:34.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:34.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:34.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.098][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:34.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:34.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:34.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:34.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:34.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:34.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:34.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:34.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:34.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:34.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:34.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:34.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:34.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:34.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:34.155][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2024-12-07 16:07:34.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:34.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:34.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:34.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:34.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:34.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:34.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:34.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:34.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:34.176][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2024-12-07 16:07:34.177][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:34.178][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2024-12-07 16:07:34.179][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:34.180][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:34.181][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:34.182][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:34.183][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:34.192][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:34.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:34.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:34.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:34.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:34.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:34.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:34.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:34.204][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2024-12-07 16:07:34.206][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:34.207][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:34.208][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2024-12-07 16:07:34.580][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2024-12-07 16:07:34.942][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:34.944][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2024-12-07 16:07:34.947][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2024-12-07 16:07:34.949][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2024-12-07 16:07:34.950][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:34.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:34.952][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:34.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:34.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:34.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:34.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:34.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:34.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:34.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:34.963][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.966][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.971][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:34.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:34.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.973][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:34.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:34.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.978][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:34.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:34.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.981][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:34.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:34.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.988][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:34.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:34.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.992][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:34.993][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:34.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.995][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:34.996][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:34.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:34.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:34.999][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:35.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.004][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.006][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.010][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:35.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:35.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.013][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.018][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:35.019][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:35.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:35.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:35.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:35.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:35.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.027][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:35.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:35.068][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2024-12-07 16:07:35.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:35.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:35.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:35.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:35.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:35.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:35.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:35.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:35.088][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2024-12-07 16:07:35.089][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:35.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2024-12-07 16:07:35.092][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:35.093][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:35.094][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:35.095][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:35.095][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:35.096][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:35.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:35.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:35.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:35.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:35.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:35.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:35.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:35.108][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2024-12-07 16:07:35.110][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:35.111][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:35.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2024-12-07 16:07:35.479][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2024-12-07 16:07:35.849][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:35.851][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2024-12-07 16:07:35.854][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2024-12-07 16:07:35.856][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2024-12-07 16:07:35.857][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:35.858][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:35.859][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:35.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:35.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:35.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:35.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:35.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:35.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:35.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:35.871][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.878][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:35.879][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:35.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:35.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:35.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.886][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:35.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:35.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.889][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:35.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:35.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:35.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:35.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:35.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:35.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:35.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.904][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:35.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:35.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:35.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.919][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:35.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:35.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:35.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.926][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:35.927][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:35.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.929][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.930][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:35.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.933][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:35.934][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:35.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:35.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:35.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:35.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:35.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:35.987][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2024-12-07 16:07:35.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:35.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:35.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:35.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:35.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:36.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:36.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:36.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:36.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:36.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:36.007][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2024-12-07 16:07:36.008][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:36.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2024-12-07 16:07:36.010][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:36.011][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:36.012][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:36.013][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:36.014][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:36.015][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:36.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:36.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:36.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:36.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:36.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:36.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:36.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:36.026][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2024-12-07 16:07:36.028][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:36.029][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:36.031][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2024-12-07 16:07:36.394][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2024-12-07 16:07:36.766][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:36.768][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2024-12-07 16:07:36.771][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2024-12-07 16:07:36.773][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2024-12-07 16:07:36.775][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:36.776][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:36.777][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:36.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:36.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:36.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:36.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:36.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:36.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:36.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:36.788][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.796][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:36.797][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:36.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:36.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.803][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:36.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:36.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:36.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:36.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.813][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:36.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:36.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:36.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:36.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.829][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:36.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:36.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:36.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.837][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.839][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.843][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:36.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:36.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.846][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.851][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:36.852][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:36.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:36.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.858][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:36.859][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:36.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:36.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:36.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:36.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:36.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:36.901][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2024-12-07 16:07:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:36.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:36.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:36.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:36.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:36.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:36.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:36.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:36.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:36.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:36.921][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2024-12-07 16:07:36.922][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:36.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2024-12-07 16:07:36.925][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:36.926][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:36.927][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:36.928][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:36.929][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:36.930][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:36.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:36.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:36.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:36.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:36.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:36.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:36.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:36.941][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2024-12-07 16:07:36.943][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:36.944][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:36.945][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2024-12-07 16:07:37.319][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2024-12-07 16:07:37.685][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:37.687][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2024-12-07 16:07:37.690][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2024-12-07 16:07:37.693][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2024-12-07 16:07:37.694][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:37.695][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:37.696][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:37.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:37.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:37.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:37.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:37.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:37.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:37.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:37.719][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.722][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.727][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:37.728][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:37.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.729][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.734][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:37.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:37.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:37.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:37.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:37.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.744][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:37.750][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:37.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:37.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:37.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:37.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.760][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:37.761][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:37.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.763][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:37.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:37.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.774][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:37.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:37.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:37.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.782][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:37.782][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:37.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:37.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:37.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.789][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:37.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:37.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:37.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:37.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:37.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:37.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:37.831][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2024-12-07 16:07:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:37.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:37.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:37.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:37.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:37.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:37.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:37.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:37.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:37.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:37.851][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2024-12-07 16:07:37.852][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:37.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2024-12-07 16:07:37.855][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:37.856][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:37.857][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:37.858][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:37.859][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:37.860][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:37.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:37.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:37.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:37.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:37.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:37.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:37.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:37.871][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2024-12-07 16:07:37.873][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:37.874][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:37.875][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2024-12-07 16:07:38.240][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2024-12-07 16:07:38.609][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:38.611][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2024-12-07 16:07:38.614][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2024-12-07 16:07:38.616][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2024-12-07 16:07:38.618][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:38.619][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:38.620][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:38.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:38.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:38.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:38.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:38.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:38.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:38.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:38.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.639][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:38.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:38.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:38.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.646][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:38.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:38.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.649][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:38.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:38.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:38.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:38.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:38.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:38.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:38.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.663][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:38.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:38.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.668][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:38.669][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:38.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.672][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:38.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:38.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.675][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:38.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:38.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.686][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:38.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:38.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:38.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:38.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:38.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:38.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.701][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:38.702][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:38.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.703][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:38.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:38.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:38.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:38.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:38.752][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2024-12-07 16:07:38.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:38.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:38.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:38.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:38.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:38.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:38.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:38.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:38.772][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2024-12-07 16:07:38.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:38.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2024-12-07 16:07:38.776][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:38.777][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:38.778][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:38.779][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:38.780][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:38.780][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:38.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:38.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:38.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:38.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:38.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:38.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:38.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:38.792][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2024-12-07 16:07:38.794][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:38.795][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:38.796][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2024-12-07 16:07:39.160][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2024-12-07 16:07:39.525][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:39.527][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2024-12-07 16:07:39.529][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2024-12-07 16:07:39.532][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2024-12-07 16:07:39.533][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:39.534][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:39.535][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:39.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:39.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:39.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:39.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:39.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:39.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:39.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:39.546][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.549][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.554][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:39.554][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:39.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.556][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.561][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:39.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:39.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.568][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:39.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:39.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:39.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:39.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.582][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:39.583][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:39.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.586][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:39.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:39.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.589][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:39.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.594][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.601][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:39.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:39.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.603][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:39.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.608][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:39.609][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:39.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:39.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:39.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:39.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:39.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:39.658][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2024-12-07 16:07:39.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:39.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:39.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:39.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:39.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:39.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:39.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:39.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:39.679][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2024-12-07 16:07:39.680][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:39.681][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2024-12-07 16:07:39.682][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:39.683][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:39.684][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:39.685][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:39.686][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:39.687][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:39.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:39.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:39.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:39.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:39.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:39.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:39.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:39.698][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2024-12-07 16:07:39.701][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:39.702][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:39.703][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2024-12-07 16:07:40.069][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2024-12-07 16:07:40.435][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:40.437][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2024-12-07 16:07:40.440][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2024-12-07 16:07:40.442][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2024-12-07 16:07:40.443][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:40.444][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:40.445][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:40.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:40.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:40.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:40.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:40.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:40.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:40.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:40.457][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.464][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:40.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:40.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:40.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:40.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.476][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:40.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:40.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.485][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:40.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:40.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:40.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.493][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:40.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:40.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:40.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:40.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:40.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:40.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.508][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:40.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:40.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.512][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:40.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:40.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:40.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:40.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:40.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.530][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:40.531][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:40.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:40.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:40.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:40.538][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:40.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:40.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:40.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:40.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:40.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:40.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:40.579][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2024-12-07 16:07:40.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:40.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:40.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:40.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:40.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:40.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:40.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:40.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:40.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:40.599][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2024-12-07 16:07:40.600][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:40.602][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2024-12-07 16:07:40.603][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:40.604][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:40.605][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:40.606][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:40.607][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:40.607][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:40.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:40.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:40.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:40.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:40.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:40.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:40.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:40.619][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2024-12-07 16:07:40.621][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:40.622][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:40.623][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2024-12-07 16:07:40.987][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2024-12-07 16:07:41.346][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:41.348][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2024-12-07 16:07:41.350][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2024-12-07 16:07:41.353][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2024-12-07 16:07:41.354][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:41.355][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:41.356][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:41.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:41.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:41.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:41.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:41.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:41.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:41.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:41.368][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.371][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.375][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:41.376][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:41.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.378][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.383][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:41.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:41.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.385][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:41.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.390][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:41.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:41.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.393][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:41.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.397][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:41.398][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:41.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.400][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:41.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.404][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:41.405][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:41.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.407][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.408][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:41.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:41.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.411][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.412][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:41.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.416][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.418][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.423][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:41.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:41.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.425][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:41.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.430][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:41.431][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:41.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:41.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:41.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:41.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:41.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:41.480][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2024-12-07 16:07:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:41.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:41.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:41.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:41.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:41.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:41.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:41.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:41.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:41.509][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2024-12-07 16:07:41.510][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:41.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2024-12-07 16:07:41.512][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:41.513][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:41.514][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:41.515][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:41.516][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:41.517][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:41.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:41.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:41.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:41.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:41.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:41.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:41.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:41.528][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2024-12-07 16:07:41.530][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:41.531][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:41.532][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2024-12-07 16:07:41.894][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2024-12-07 16:07:42.255][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:42.257][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2024-12-07 16:07:42.260][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2024-12-07 16:07:42.262][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2024-12-07 16:07:42.263][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:42.264][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:42.265][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:42.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:42.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:42.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:42.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:42.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:42.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:42.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:42.277][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.284][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:42.285][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:42.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:42.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:42.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.291][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:42.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:42.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:42.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:42.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:42.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:42.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:42.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:42.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:42.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:42.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.313][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:42.314][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:42.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.316][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:42.317][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.320][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:42.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:42.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.331][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:42.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:42.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:42.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:42.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.338][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:42.339][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:42.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:42.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:42.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.346][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:42.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:42.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:42.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:42.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:42.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:42.389][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2024-12-07 16:07:42.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:42.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:42.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:42.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:42.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:42.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:42.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:42.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:42.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:42.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:42.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:42.410][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2024-12-07 16:07:42.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:42.412][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2024-12-07 16:07:42.413][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:42.414][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:42.415][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:42.416][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:42.417][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:42.418][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:42.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:42.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:42.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:42.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:42.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:42.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:42.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:42.429][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2024-12-07 16:07:42.432][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:42.433][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:42.434][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2024-12-07 16:07:42.816][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2024-12-07 16:07:43.255][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:43.257][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2024-12-07 16:07:43.260][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2024-12-07 16:07:43.262][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2024-12-07 16:07:43.264][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:43.265][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:43.266][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:43.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:43.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:43.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:43.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:43.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:43.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:43.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:43.278][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.280][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.285][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:43.286][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:43.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.288][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:43.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:43.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.292][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:43.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:43.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.295][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:43.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.300][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:43.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:43.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:43.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:43.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:43.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:43.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:43.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:43.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:43.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.330][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:43.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:43.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.345][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:43.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:43.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:43.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.352][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:43.353][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:43.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:43.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:43.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:43.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:43.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:43.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:43.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:43.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:43.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:43.402][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2024-12-07 16:07:43.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:43.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:43.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:43.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:43.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:43.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:43.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:43.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:43.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:43.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:43.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:43.422][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2024-12-07 16:07:43.423][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:43.425][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2024-12-07 16:07:43.426][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:43.427][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:43.428][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:43.429][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:43.430][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:43.431][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:43.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:43.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:43.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:43.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:43.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:43.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:43.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:43.442][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2024-12-07 16:07:43.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:43.445][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:43.447][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2024-12-07 16:07:43.813][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2024-12-07 16:07:44.267][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:44.269][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2024-12-07 16:07:44.272][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2024-12-07 16:07:44.274][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2024-12-07 16:07:44.276][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:44.277][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:44.278][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:44.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:44.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:44.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:44.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:44.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:44.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:44.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:44.290][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.297][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:44.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:44.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:44.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.304][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:44.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:44.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.307][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:44.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:44.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:44.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:44.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:44.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.326][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:44.327][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:44.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.330][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:44.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.334][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:44.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:44.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.345][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:44.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:44.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:44.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.352][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:44.353][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:44.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:44.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:44.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:44.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:44.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:44.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:44.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:44.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:44.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:44.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:44.402][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2024-12-07 16:07:44.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:44.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:44.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:44.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:44.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:44.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:44.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:44.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:44.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:44.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:44.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:44.431][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2024-12-07 16:07:44.433][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:44.434][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2024-12-07 16:07:44.435][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:44.436][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:44.437][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:44.438][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:44.439][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:44.440][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:44.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:44.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:44.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:44.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:44.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:44.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:44.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:44.451][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2024-12-07 16:07:44.453][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:44.454][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:44.455][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2024-12-07 16:07:44.818][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2024-12-07 16:07:45.181][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:45.183][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2024-12-07 16:07:45.186][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2024-12-07 16:07:45.188][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2024-12-07 16:07:45.189][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:45.190][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:45.191][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:45.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:45.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:45.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:45.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:45.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:45.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:45.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:45.203][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.206][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.210][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:45.211][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:45.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.214][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:45.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:45.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.218][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:45.219][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:45.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:45.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:45.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.232][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:45.233][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.235][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:45.240][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:45.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.242][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.243][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:45.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:45.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.257][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:45.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:45.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.260][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:45.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.265][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:45.266][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:45.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.268][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.272][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:45.273][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:45.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:45.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:45.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:45.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:45.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:45.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:45.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:45.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:45.315][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2024-12-07 16:07:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:45.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:45.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:45.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:45.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:45.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:45.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:45.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:45.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:45.336][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2024-12-07 16:07:45.337][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:45.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2024-12-07 16:07:45.340][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:45.341][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:45.342][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:45.343][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:45.343][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:45.344][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:45.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:45.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:45.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:45.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:45.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:45.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:45.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:45.356][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2024-12-07 16:07:45.358][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:45.359][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:45.360][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2024-12-07 16:07:45.726][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2024-12-07 16:07:46.090][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:46.092][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2024-12-07 16:07:46.095][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2024-12-07 16:07:46.097][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2024-12-07 16:07:46.099][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:46.100][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:46.101][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:46.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:46.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:46.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:46.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:46.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:46.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:46.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:46.113][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.120][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:46.121][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:46.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.123][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:46.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:46.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.127][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:46.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:46.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.130][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:46.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:46.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:46.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:46.143][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:46.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:46.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:46.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:46.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.153][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:46.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:46.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:46.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.161][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.179][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:46.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:46.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.182][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:46.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.186][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:46.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:46.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:46.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:46.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:46.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:46.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:46.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:46.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:46.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:46.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:46.236][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2024-12-07 16:07:46.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:46.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:46.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:46.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:46.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:46.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:46.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:46.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:46.256][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2024-12-07 16:07:46.257][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:46.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2024-12-07 16:07:46.260][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:46.261][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:46.262][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:46.263][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:46.263][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:46.264][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:46.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:46.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:46.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:46.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:46.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:46.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:46.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:46.275][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2024-12-07 16:07:46.278][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:46.279][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:46.280][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2024-12-07 16:07:46.646][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2024-12-07 16:07:47.014][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:47.016][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2024-12-07 16:07:47.019][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2024-12-07 16:07:47.021][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2024-12-07 16:07:47.022][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:47.023][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:47.024][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:47.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:47.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:47.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:47.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:47.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:47.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:47.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:47.036][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.043][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:47.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:47.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:47.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:47.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.050][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:47.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:47.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:47.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:47.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:47.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:47.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:47.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:47.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:47.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:47.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.072][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:47.073][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:47.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.076][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:47.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:47.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.079][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:47.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:47.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.084][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.091][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:47.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:47.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.098][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:47.099][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:47.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:47.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:47.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:47.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:47.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:47.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:47.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:47.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:47.148][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2024-12-07 16:07:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:47.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:47.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:47.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:47.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:47.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:47.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:47.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:47.169][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2024-12-07 16:07:47.170][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:47.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2024-12-07 16:07:47.172][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:47.173][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:47.174][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:47.175][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:47.176][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:47.177][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:47.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:47.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:47.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:47.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:47.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:47.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:47.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:47.197][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2024-12-07 16:07:47.199][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:47.200][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:47.201][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2024-12-07 16:07:47.576][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2024-12-07 16:07:47.959][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:47.961][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2024-12-07 16:07:47.964][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2024-12-07 16:07:47.966][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2024-12-07 16:07:47.967][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:47.968][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:47.969][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:47.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:47.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:47.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:47.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:47.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:47.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:47.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:47.981][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.983][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:47.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.988][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:47.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:47.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:47.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.995][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:47.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:47.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:47.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:48.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:48.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:48.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.005][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:48.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:48.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:48.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:48.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.012][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.017][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:48.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:48.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.021][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:48.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:48.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:48.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.031][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.035][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:48.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:48.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.038][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.043][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:48.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:48.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.045][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:48.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:48.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:48.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:48.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.052][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:48.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:48.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:48.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:48.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:48.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:48.093][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2024-12-07 16:07:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:48.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:48.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:48.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:48.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:48.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:48.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:48.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:48.113][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2024-12-07 16:07:48.114][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:48.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2024-12-07 16:07:48.117][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:48.118][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:48.119][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:48.120][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:48.121][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:48.122][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:48.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:48.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:48.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:48.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:48.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:48.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:48.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:48.133][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2024-12-07 16:07:48.136][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:48.136][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:48.138][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2024-12-07 16:07:48.505][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2024-12-07 16:07:48.875][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:48.877][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2024-12-07 16:07:48.881][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2024-12-07 16:07:48.883][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2024-12-07 16:07:48.884][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:48.885][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:48.887][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:48.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:48.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:48.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:48.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:48.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:48.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:48.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:48.900][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.908][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:48.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:48.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.916][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:48.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:48.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.919][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.924][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:48.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:48.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.926][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:48.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:48.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.934][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:48.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.939][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:48.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:48.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.943][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:48.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:48.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:48.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:48.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.959][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:48.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:48.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.962][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.968][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:48.971][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:48.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.990][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:48.991][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:48.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.992][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:48.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:48.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:48.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:49.032][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2024-12-07 16:07:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:49.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:49.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:49.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:49.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:49.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:49.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:49.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:49.053][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2024-12-07 16:07:49.054][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:49.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2024-12-07 16:07:49.057][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:49.058][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:49.059][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:49.060][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:49.061][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:49.061][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:49.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:49.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:49.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:49.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:49.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:49.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:49.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:49.073][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2024-12-07 16:07:49.075][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:49.076][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:49.077][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2024-12-07 16:07:49.445][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2024-12-07 16:07:49.813][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:49.816][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2024-12-07 16:07:49.820][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2024-12-07 16:07:49.823][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2024-12-07 16:07:49.825][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:49.826][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:49.827][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:49.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:49.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:49.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:49.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:49.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:49.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:49.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:49.843][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.845][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.853][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:49.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:49.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:49.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:49.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:49.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:49.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:49.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.876][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:49.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:49.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:49.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:49.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:49.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.898][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:49.899][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:49.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.902][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:49.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.909][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.914][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:49.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:49.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.922][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:49.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:49.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:49.931][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:49.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.933][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:49.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:49.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:49.976][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2024-12-07 16:07:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:49.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:49.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:49.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:49.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:49.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:49.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:49.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:49.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:49.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:49.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:49.999][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2024-12-07 16:07:50.000][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-12-07 16:07:50.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2024-12-07 16:07:50.003][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-12-07 16:07:50.004][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-12-07 16:07:50.005][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-12-07 16:07:50.006][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-12-07 16:07:50.007][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-12-07 16:07:50.008][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-12-07 16:07:50.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:50.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:50.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:50.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:50.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:50.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:50.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:50.020][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2024-12-07 16:07:50.023][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-12-07 16:07:50.024][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-12-07 16:07:50.025][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2024-12-07 16:07:50.390][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2024-12-07 16:07:50.777][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-12-07 16:07:50.782][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2024-12-07 16:07:50.789][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2024-12-07 16:07:50.794][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2024-12-07 16:07:50.797][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-12-07 16:07:50.799][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-12-07 16:07:50.802][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-12-07 16:07:50.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:50.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:50.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:50.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:50.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:50.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:50.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:50.822][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.833][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:50.834][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:50.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.836][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.837][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:50.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.842][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:50.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:50.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:50.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:50.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:50.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:50.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:50.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:50.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:50.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:50.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:50.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.866][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:50.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:50.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.869][ef$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:50.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:50.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-12-07 16:07:50.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:50.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.880][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.885][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:50.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:50.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.893][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:50.894][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:50.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-12-07 16:07:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:50.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:50.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:50.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:50.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:50.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:50.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:50.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:50.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:50.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:50.946][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2024-12-07 16:07:50.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:50.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:50.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:50.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:50.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:50.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:50.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:50.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:50.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:50.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:50.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:50.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:50.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:50.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:50.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.003][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:51.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.023][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.033][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.035][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.040][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.053][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:07:51.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.072][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.079][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.085][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.088][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.089][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:07:51.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.128][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.129][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.130][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.131][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.131][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.132][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.141][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.145][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:07:51.159][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:51.160][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:51.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:51.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:51.176][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:51.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-12-07 16:07:51.178][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:51.180][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-12-07 16:07:51.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.269][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:51.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.289][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.305][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.306][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:07:51.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.339][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.346][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.348][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.349][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.350][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.351][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.356][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:07:51.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.388][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.395][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.399][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.401][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.405][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.426][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:07:51.427][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:51.428][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:51.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:51.457][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:51.460][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:51.461][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-12-07 16:07:51.462][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:51.463][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-12-07 16:07:51.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.615][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:51.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.635][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.636][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.642][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.646][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.648][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.651][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.652][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:07:51.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.685][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.687][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.688][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.691][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.696][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.697][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.701][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.702][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:07:51.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.742][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.743][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.744][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.746][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.751][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.753][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.755][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.757][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.760][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2024-12-07 16:07:51.773][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:51.774][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:51.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:51.787][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:51.790][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:51.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2024-12-07 16:07:51.793][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:51.794][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2024-12-07 16:07:51.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:51.885][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:51.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.905][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.915][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.916][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.917][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.922][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2024-12-07 16:07:51.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.954][private$selectFields]
biodb.TRACE[2024-12-07 16:07:51.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:51.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:51.957][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.965][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.967][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:51.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.970][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.971][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:07:51.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:51.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:51.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:51.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:51.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:51.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:51.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:51.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.004][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.005][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.006][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.006][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.010][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.014][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.016][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.020][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.021][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.043][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2024-12-07 16:07:52.044][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:52.045][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:52.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:52.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:52.061][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:52.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2024-12-07 16:07:52.063][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:52.065][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2024-12-07 16:07:52.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.171][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:52.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.191][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.194][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.195][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.203][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.208][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2024-12-07 16:07:52.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.240][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.253][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.254][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.255][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.258][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2024-12-07 16:07:52.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.290][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.300][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.306][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.307][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2024-12-07 16:07:52.321][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:52.322][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:52.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:52.381][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:52.384][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:52.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:07:52.386][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:52.387][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:07:52.391][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:52.394][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:52.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:07:52.396][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:52.397][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:07:52.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.462][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:52.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.481][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.482][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.491][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.493][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.494][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.498][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.499][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:07:52.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.531][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.543][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.548][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:07:52.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.580][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.581][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.582][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.583][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.592][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.596][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.597][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:07:52.611][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:52.611][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:52.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:52.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:52.628][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:52.629][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:07:52.630][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:52.632][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:07:52.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.705][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:52.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.724][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.725][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.726][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.735][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.736][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.740][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:07:52.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.772][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.774][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.775][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.783][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.785][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.788][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.789][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:07:52.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.822][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.823][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.824][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.832][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.834][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.839][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.852][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:07:52.853][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:52.854][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:52.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:52.867][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:52.870][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:52.872][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:07:52.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:52.874][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:07:52.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:52.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:52.941][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:52.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:52.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:52.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:52.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:52.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:52.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:52.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.961][private$selectFields]
biodb.TRACE[2024-12-07 16:07:52.962][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:52.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:52.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.967][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.980][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:52.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.985][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:52.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:52.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:52.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:07:52.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:52.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.016][private$selectFields]
biodb.TRACE[2024-12-07 16:07:53.017][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:53.018][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:53.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.020][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.021][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.023][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.026][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.028][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.032][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.033][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:53.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2024-12-07 16:07:53.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.065][private$selectFields]
biodb.TRACE[2024-12-07 16:07:53.065][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:53.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:53.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.077][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.081][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2024-12-07 16:07:53.095][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:53.096][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:53.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:53.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:53.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:53.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2024-12-07 16:07:53.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:53.133][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2024-12-07 16:07:53.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.313][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:53.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.332][private$selectFields]
biodb.TRACE[2024-12-07 16:07:53.333][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:53.334][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:53.335][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.344][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.349][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:53.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-12-07 16:07:53.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.381][private$selectFields]
biodb.TRACE[2024-12-07 16:07:53.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:53.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:53.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.388][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.389][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.393][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.396][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.397][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:53.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-12-07 16:07:53.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.430][private$selectFields]
biodb.TRACE[2024-12-07 16:07:53.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:53.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:53.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.442][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:53.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.446][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.447][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:53.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:53.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-12-07 16:07:53.461][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:53.462][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:53.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:53.475][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:53.479][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:53.480][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2024-12-07 16:07:53.481][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:53.483][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2024-12-07 16:07:53.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:53.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:53.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:53.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:53.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:53.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:53.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:53.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.134][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:54.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.154][private$selectFields]
biodb.TRACE[2024-12-07 16:07:54.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:54.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:54.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.161][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.165][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.167][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.171][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:54.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2024-12-07 16:07:54.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.211][private$selectFields]
biodb.TRACE[2024-12-07 16:07:54.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:54.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:54.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.217][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.223][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.226][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.227][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:54.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.240][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2024-12-07 16:07:54.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.258][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.259][private$selectFields]
biodb.TRACE[2024-12-07 16:07:54.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:54.260][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:54.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.274][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.288][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2024-12-07 16:07:54.289][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:54.290][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:54.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:54.303][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:54.306][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:54.307][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2024-12-07 16:07:54.308][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:54.310][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2024-12-07 16:07:54.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.401][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:54.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.421][private$selectFields]
biodb.TRACE[2024-12-07 16:07:54.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:54.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:54.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.428][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.432][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.432][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.433][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2024-12-07 16:07:54.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.471][private$selectFields]
biodb.TRACE[2024-12-07 16:07:54.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:54.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:54.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.475][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.483][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.488][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.501][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2024-12-07 16:07:54.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.528][private$selectFields]
biodb.TRACE[2024-12-07 16:07:54.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:54.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:54.531][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.534][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.540][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-12-07 16:07:54.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.544][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-12-07 16:07:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2024-12-07 16:07:54.558][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:54.559][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:07:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:07:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:07:54.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.578][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:07:54.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:07:54.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.582][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:07:54.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:07:54.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:07:54.590][biodb::testThat]
biodb.INFO [2024-12-07 16:07:54.591][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-12-07 16:07:54.592][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-12-07 16:07:54.593][biodb::testThat]
biodb.TRACE[2024-12-07 16:07:54.595][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:07:54.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:07:54.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:07:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:07:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-12-07 16:07:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-12-07 16:07:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:54.664][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:54.667][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:54.668][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:07:54.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:54.670][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:07:54.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:54.695][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:54.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:07:54.698][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:54.699][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:07:54.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:54.741][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:54.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:54.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:54.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:54.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:54.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:54.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:54.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:54.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:54.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:54.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:54.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:54.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:54.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.843][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:54.844][private$selectFields]
biodb.TRACE[2024-12-07 16:07:54.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:54.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:54.847][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:54.848][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:54.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:54.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.851][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:54.852][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:54.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.858][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:54.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:54.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:54.862][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:54.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:54.869][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:54.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.871][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.879][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.883][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:54.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:54.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:54.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:54.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.889][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:54.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:54.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.892][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.893][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:54.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:54.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.899][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.900][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:54.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:54.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:54.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:54.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.906][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:54.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:54.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.913][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.914][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.921][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.922][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.925][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:54.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:54.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:54.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:54.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.932][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:54.933][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:54.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:54.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:54.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.937][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:54.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:54.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.944][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:54.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:54.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:54.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:54.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:54.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.955][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:54.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:54.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.962][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.962][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:54.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.965][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:54.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:54.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:54.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:54.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.972][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:54.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:54.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:54.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:54.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:54.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:54.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:54.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:54.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:54.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:54.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:54.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:54.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-12-07 16:07:55.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.176][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.197][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:55.198][private$selectFields]
biodb.TRACE[2024-12-07 16:07:55.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:55.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:55.201][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:55.202][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.203][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.205][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.210][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.212][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.222][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.226][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.233][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.237][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.244][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.247][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.254][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.254][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.264][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.269][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.276][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.276][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.279][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.283][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.284][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.286][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:55.287][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:55.288][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.291][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.291][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.294][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.298][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.309][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.310][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.312][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.319][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.323][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.327][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.330][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.400][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.470][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-12-07 16:07:55.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.545][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.566][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:55.567][private$selectFields]
biodb.TRACE[2024-12-07 16:07:55.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:55.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:55.570][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:55.570][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.574][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.581][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.602][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.603][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.605][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.612][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.613][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.616][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.619][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.623][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.626][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.633][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:55.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.637][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.649][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.650][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.653][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.657][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.660][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:55.661][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:55.662][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.665][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.666][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.672][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.675][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.680][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.682][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.682][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.689][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.690][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.693][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.700][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:55.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.712][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.719][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:55.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:55.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:55.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.795][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:55.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:55.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:55.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:55.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.825][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:07:55.826][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:55.826][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:55.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:55.840][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:55.843][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:55.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:07:55.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:55.846][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:07:55.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:55.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:55.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:55.889][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:55.892][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:55.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:07:55.894][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:55.895][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:07:55.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:55.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:55.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:55.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:55.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:55.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:55.962][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:55.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:55.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:55.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:55.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:55.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:55.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:55.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:55.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:55.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:55.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:55.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:55.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:55.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:55.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:55.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:55.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.070][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.071][private$selectFields]
biodb.TRACE[2024-12-07 16:07:56.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:56.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:56.074][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.075][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.079][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.080][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.081][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.088][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.095][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.096][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.097][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.099][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.101][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.103][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.104][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.113][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.116][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.117][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.120][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.121][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.122][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.124][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.125][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.128][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.129][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.130][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.133][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.134][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.137][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.140][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.141][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.142][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.146][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.153][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.161][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.162][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.165][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.168][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.168][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.171][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.172][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.173][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.174][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.177][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.178][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.179][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.185][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.186][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.189][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.201][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.202][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.205][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.209][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.210][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.211][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.213][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.214][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.221][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:56.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.256][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.260][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:07:56.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:56.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:56.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:56.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:56.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:56.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:56.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:56.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.439][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.460][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.481][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.482][private$selectFields]
biodb.TRACE[2024-12-07 16:07:56.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:56.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:56.485][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.486][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.489][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.495][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.496][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.502][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.504][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.508][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.511][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.512][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.514][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.518][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.519][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.522][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.526][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.527][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.529][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.537][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.538][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.540][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.545][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.547][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.552][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.553][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.555][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.556][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.558][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.559][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.559][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.561][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.565][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.566][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.568][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.569][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.572][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.575][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.576][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.577][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.578][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.581][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.582][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.588][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.601][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.602][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.604][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.608][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.609][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.610][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.611][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.612][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.615][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.616][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.617][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.618][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.619][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:56.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.631][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.634][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.689][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:07:56.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:56.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:56.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:56.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:56.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:56.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:56.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:56.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.808][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.837][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.855][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.856][private$selectFields]
biodb.TRACE[2024-12-07 16:07:56.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:56.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:56.858][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:56.859][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.862][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.869][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.869][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.880][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.883][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.887][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.888][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.890][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.894][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.897][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.900][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.901][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.904][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.905][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.911][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.914][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.923][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:56.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.924][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.925][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.926][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.932][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.936][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.943][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:56.944][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:56.945][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.948][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.949][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:56.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.955][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:56.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:56.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:56.960][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:56.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.962][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.963][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:56.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.965][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.966][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.967][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:56.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:56.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.972][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.973][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:56.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.976][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:56.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:56.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.979][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:56.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:56.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.982][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.983][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:56.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:56.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.078][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.113][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:07:57.114][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:57.114][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:57.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:57.128][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:57.131][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:57.132][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:07:57.133][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:57.134][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:07:57.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.294][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:57.297][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:57.298][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:07:57.299][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:57.300][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:07:57.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:57.361][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:57.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.423][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.462][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:57.462][private$selectFields]
biodb.TRACE[2024-12-07 16:07:57.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:57.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:57.465][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:57.466][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.468][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.469][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.470][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.476][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.483][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.484][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.491][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.493][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.498][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.499][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.501][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.504][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.508][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.512][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.523][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.526][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.533][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.540][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.543][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.546][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.547][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.551][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:57.551][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:57.552][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.556][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.559][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.562][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.563][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.569][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.571][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.573][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.574][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.576][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.577][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.583][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.584][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.585][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.587][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.588][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.590][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.595][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:57.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-12-07 16:07:57.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:57.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:57.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:57.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:57.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:57.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:57.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:57.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.809][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.831][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:57.831][private$selectFields]
biodb.TRACE[2024-12-07 16:07:57.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:57.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:57.834][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:57.835][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.838][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.839][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.845][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.845][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.852][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.868][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.869][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.871][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.878][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.879][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.883][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.885][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.889][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.890][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.896][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.900][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:57.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.903][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.904][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.910][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.911][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.915][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.917][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.922][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:57.927][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:57.928][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.932][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.933][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.939][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.940][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:57.941][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:57.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:57.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:57.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.946][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:57.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.951][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:57.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.953][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.954][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.955][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:57.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.958][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.959][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:57.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.962][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:57.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:57.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.965][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:57.966][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:57.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.969][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:57.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:57.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.987][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:57.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:57.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-12-07 16:07:58.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:58.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:58.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:58.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:58.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:58.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:58.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:58.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.167][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.171][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.189][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:58.190][private$selectFields]
biodb.TRACE[2024-12-07 16:07:58.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:58.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:58.192][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:58.193][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.197][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.199][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.208][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.208][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.209][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.215][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.216][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.219][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.220][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.222][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.223][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.229][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.233][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.234][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.236][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.247][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.251][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.255][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.259][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.260][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.261][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.263][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.267][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.276][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.281][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.284][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.287][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.288][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.293][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.294][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.297][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:58.298][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:58.299][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.302][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.303][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.304][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.306][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.311][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.316][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.323][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.324][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.332][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.336][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.339][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.340][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.341][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.344][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:58.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:07:58.485][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:58.486][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:58.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:58.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:58.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:58.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:58.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:58.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:58.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:58.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:58.511][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:58.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-12-07 16:07:58.514][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:58.515][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-12-07 16:07:58.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:58.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:58.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:58.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:58.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:58.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:58.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:58.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:58.555][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:58.558][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:58.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-12-07 16:07:58.561][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:58.562][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-12-07 16:07:58.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:58.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:58.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:58.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:58.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:58.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:58.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:58.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:58.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:58.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:58.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:58.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:58.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:58.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:58.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:58.603][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:58.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:58.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:58.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:58.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:58.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:58.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:58.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.624][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:58.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.702][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:58.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:58.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.706][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:58.707][private$selectFields]
biodb.TRACE[2024-12-07 16:07:58.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:58.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:58.709][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:58.710][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.714][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.721][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.722][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.728][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.729][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.735][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.742][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.745][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.752][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:58.753][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:58.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.756][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.760][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.761][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.766][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.767][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.769][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.773][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.776][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:58.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.780][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.781][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.787][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.788][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.792][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.794][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.795][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.796][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.799][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:58.800][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:58.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.801][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.802][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:58.803][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:58.804][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.808][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.820][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.826][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.828][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.831][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.833][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.838][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.841][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.845][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.848][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:58.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.860][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:58.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:58.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.938][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:58.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:58.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:58.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2024-12-07 16:07:58.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:58.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:58.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:58.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:58.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:58.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:58.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:58.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:58.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:58.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.993][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:58.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:58.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:58.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:58.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:58.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.025][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.067][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.075][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:59.075][private$selectFields]
biodb.TRACE[2024-12-07 16:07:59.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:59.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:59.078][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:59.079][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.082][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.083][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.089][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.089][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.092][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.105][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.109][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.110][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.116][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.117][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.119][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.125][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.126][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.127][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.130][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.133][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.137][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.140][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.151][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.151][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.154][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.155][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.161][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.162][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.164][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.165][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.168][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.171][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.172][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.175][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:59.176][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:59.177][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.179][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.180][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.181][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.186][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.187][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.188][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.193][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.196][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.208][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.209][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.212][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.214][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.219][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.230][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.284][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.288][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.291][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-12-07 16:07:59.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:59.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:59.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:59.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:59.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:59.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:59.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.434][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.462][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:59.463][private$selectFields]
biodb.TRACE[2024-12-07 16:07:59.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:59.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:59.465][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:59.466][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.470][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.477][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.483][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.491][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.498][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.499][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.502][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.504][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.508][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.509][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.509][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.512][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.515][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.516][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.517][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.518][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.522][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.523][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.525][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.529][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.532][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.533][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.534][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.536][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.537][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.538][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.539][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.543][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.544][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.545][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.546][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.547][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.551][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.552][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.554][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.555][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.555][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.558][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:59.559][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:07:59.560][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.563][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.564][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.564][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.566][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.570][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.571][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.573][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.577][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.580][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.584][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.587][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.588][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.589][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.591][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.592][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.594][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.595][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.596][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.598][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.599][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:07:59.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.614][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.728][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:07:59.729][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:07:59.730][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:07:59.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:59.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:59.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:59.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:59.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:59.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:59.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:07:59.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:59.746][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:59.747][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2024-12-07 16:07:59.748][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:59.749][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2024-12-07 16:07:59.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:59.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:59.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:59.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:59.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:59.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:59.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:59.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:59.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:59.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:59.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:59.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:59.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:59.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:59.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:59.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:59.792][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:07:59.795][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:07:59.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2024-12-07 16:07:59.797][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:07:59.798][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2024-12-07 16:07:59.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:59.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:59.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:59.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:59.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:59.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:59.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:59.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:59.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:59.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:59.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:59.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:59.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:59.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:59.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:59.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:59.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:59.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:59.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:59.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:59.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:59.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:59.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:59.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:07:59.860][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:07:59.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:07:59.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:07:59.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:07:59.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:07:59.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:07:59.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:07:59.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:07:59.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:07:59.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.944][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:07:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:07:59.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:07:59.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:07:59.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:07:59.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:07:59.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.970][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:59.971][private$selectFields]
biodb.TRACE[2024-12-07 16:07:59.972][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:07:59.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:07:59.973][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:07:59.974][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:07:59.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:07:59.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.977][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.978][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:07:59.979][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:07:59.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.980][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:07:59.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.984][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:07:59.985][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:07:59.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.987][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:07:59.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:07:59.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.991][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:07:59.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.994][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:07:59.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:07:59.998][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:07:59.998][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:07:59.999][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.001][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.002][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.005][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.006][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.009][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.010][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.016][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.017][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.019][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.023][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.030][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.032][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.037][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.040][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.044][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.047][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.048][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.051][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.052][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.054][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.055][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.058][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.061][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.062][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.065][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:00.066][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:00.067][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.069][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.070][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.071][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.076][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.077][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.088][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.089][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.091][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.098][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.099][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.102][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.109][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:00.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.175][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.178][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.220][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:00.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:00.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:00.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:00.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:00.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:00.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:00.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.302][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.352][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:00.353][private$selectFields]
biodb.TRACE[2024-12-07 16:08:00.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:00.355][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:00.355][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:00.356][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.360][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.361][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.363][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.364][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.366][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.367][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.369][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.370][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.371][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.373][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.376][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.378][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.380][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.388][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.389][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.391][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.394][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.395][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.396][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.399][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.399][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.402][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.406][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.407][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.409][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.410][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.419][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.423][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.424][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.426][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.427][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.428][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.434][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.436][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.437][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.441][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.442][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.443][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.444][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.445][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.448][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:00.449][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:00.450][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.453][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.456][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.460][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.464][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.465][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.466][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.471][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.472][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.473][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.485][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.492][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.493][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.497][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.562][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.597][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:00.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:00.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:00.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:00.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:00.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:00.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:00.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:00.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.688][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.709][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.727][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.731][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.734][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:00.735][private$selectFields]
biodb.TRACE[2024-12-07 16:08:00.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:00.737][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:00.738][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:00.739][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.742][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.749][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.760][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.761][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.762][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.763][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.771][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.772][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.773][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.775][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.779][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.780][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.783][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.786][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.787][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.789][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.793][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.800][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.806][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.808][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.811][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:00.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.813][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.814][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.816][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.820][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.821][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.822][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.824][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.829][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.831][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.832][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:00.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.835][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:00.835][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:00.836][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.839][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.840][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.841][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.842][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.846][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.847][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.849][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.853][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.856][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.857][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.861][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.861][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.863][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.864][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.865][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.867][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.871][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.872][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.875][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:00.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:00.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.886][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.890][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:00.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:00.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:00.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:00.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:00.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:00.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:00.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.970][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:00.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:00.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:00.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:00.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:00.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:00.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:01.001][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:08:01.001][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:08:01.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:08:01.015][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:01.018][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:01.019][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2024-12-07 16:08:01.020][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:01.021][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2024-12-07 16:08:01.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.184][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:01.187][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:01.188][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2024-12-07 16:08:01.189][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:01.190][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2024-12-07 16:08:01.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:01.251][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:08:01.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.360][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:01.361][private$selectFields]
biodb.TRACE[2024-12-07 16:08:01.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:01.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:01.363][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:01.364][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.367][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.367][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.368][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.370][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.374][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.374][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.375][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.377][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.381][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.384][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.385][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.386][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.387][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.388][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.391][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.394][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.395][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.398][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.399][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.401][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.405][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.406][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.407][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.408][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.409][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.412][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.413][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.415][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.419][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.420][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.422][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.426][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.429][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.433][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.434][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.437][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.440][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.441][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.442][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.444][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.445][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.447][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.448][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.449][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.451][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.452][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.453][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.454][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.455][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:01.456][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:01.457][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.460][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.460][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.463][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.464][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.467][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.468][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.474][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.478][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.479][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.481][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.488][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.489][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.490][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.492][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.495][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.496][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.497][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.498][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.499][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:01.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.515][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.518][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.540][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.611][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2024-12-07 16:08:01.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:01.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:01.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:01.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:01.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:01.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:01.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:01.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.693][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.715][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.743][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:01.744][private$selectFields]
biodb.TRACE[2024-12-07 16:08:01.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:01.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:01.747][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:01.748][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.750][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.751][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.752][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.754][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.757][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.758][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.761][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.769][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.770][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.771][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.772][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.776][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.779][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.783][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.790][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.791][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.793][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.794][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.797][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.804][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.815][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:01.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.817][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.818][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.819][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.821][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.821][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.824][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.825][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.826][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.828][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.829][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.829][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.831][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.835][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.836][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.836][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:01.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.838][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.839][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:01.840][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:01.841][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.844][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.851][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.858][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.862][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.869][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.872][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.880][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.881][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.882][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.885][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:01.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.897][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:01.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:01.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:01.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:01.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:01.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:01.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:01.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:01.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:01.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2024-12-07 16:08:02.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:02.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:02.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:02.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:02.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:02.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:02.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.061][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.083][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:02.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:02.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:02.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:02.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.111][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:02.112][private$selectFields]
biodb.TRACE[2024-12-07 16:08:02.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:02.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:02.114][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:02.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.119][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.120][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.125][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.130][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.136][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.139][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.140][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.143][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.146][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.147][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.148][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.150][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.151][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.158][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.159][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.160][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.163][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:02.164][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:02.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.166][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.170][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.177][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.180][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.180][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.181][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.183][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.187][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.187][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.188][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.190][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.191][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.192][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.194][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.194][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.197][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.198][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.200][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.201][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.204][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.205][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.206][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.207][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.208][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:02.209][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:02.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.211][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.212][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:02.213][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:02.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.214][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.216][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.217][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.220][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.223][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.224][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.227][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.231][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.232][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.241][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.242][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.245][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.247][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.248][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.249][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.252][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.347][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:08:02.378][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:08:02.379][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:08:02.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:02.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:02.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:02.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:02.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:02.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:02.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:02.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:08:02.479][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:02.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:02.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:08:02.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:02.486][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:08:02.489][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:02.491][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:02.493][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:08:02.494][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:02.495][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:08:02.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:02.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:02.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:02.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:02.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:02.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:02.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:02.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:02.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:02.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:02.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:02.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:02.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:02.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:02.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:02.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:02.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:02.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:02.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:02.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:02.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:02.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:02.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:02.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:02.562][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:08:02.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:02.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:02.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:02.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:02.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:02.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:02.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.585][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.620][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.666][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:02.667][private$selectFields]
biodb.TRACE[2024-12-07 16:08:02.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:02.669][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:02.670][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:02.671][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.672][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.673][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.674][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.682][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.689][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.696][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.697][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.705][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.706][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.709][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.712][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.713][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.714][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.715][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.716][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.719][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.720][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.721][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.728][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.729][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.732][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.733][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.738][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.739][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.740][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.742][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.743][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.750][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.751][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.753][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.756][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.757][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.758][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.760][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:02.761][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:02.767][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.770][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.771][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.777][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.778][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.784][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.788][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.791][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.798][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.799][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.800][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.803][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.805][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.806][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.807][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.809][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.810][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:02.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.875][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.882][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:02.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:02.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:02.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:02.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:08:02.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:02.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:02.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:02.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:02.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:02.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:02.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:02.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:02.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.966][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:02.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:02.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:02.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:02.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:02.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:02.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:02.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.046][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.046][private$selectFields]
biodb.TRACE[2024-12-07 16:08:03.047][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:03.048][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:03.049][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.050][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.054][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.060][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.060][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.067][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.071][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.074][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.078][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.081][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.082][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.085][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.086][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.088][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.089][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.092][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.095][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.102][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.112][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.113][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.116][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.123][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.124][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.125][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.126][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.131][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.132][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.133][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.134][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.135][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.138][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.139][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.153][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.155][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.162][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.167][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.169][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.170][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.171][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.173][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.176][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.177][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:03.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.192][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.243][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.275][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-12-07 16:08:03.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:03.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:03.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:03.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:03.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:03.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:03.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:03.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.371][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.374][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.396][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.413][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.414][private$selectFields]
biodb.TRACE[2024-12-07 16:08:03.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:03.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:03.416][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.417][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.421][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.424][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.428][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.442][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.449][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.453][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.456][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.457][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.460][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.463][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.464][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.466][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.470][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.470][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.473][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.481][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.482][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.484][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.491][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.495][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.496][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.498][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.499][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.501][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.502][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:03.503][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:03.504][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.507][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.508][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.514][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.522][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.525][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.532][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.536][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.539][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.542][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.543][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:03.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.639][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.643][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.673][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:08:03.674][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:08:03.674][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:08:03.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:03.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:03.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:03.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:03.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:03.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:03.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:08:03.688][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:03.690][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:03.692][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:08:03.693][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:03.694][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:08:03.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:03.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:03.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:03.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:03.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:03.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:03.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:03.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:03.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:03.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:03.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:03.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:03.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:03.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:03.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:03.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:03.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:03.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:03.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:03.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:03.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:03.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:03.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:03.756][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:08:03.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:03.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:03.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:03.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:03.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:03.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:03.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.809][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.852][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.853][private$selectFields]
biodb.TRACE[2024-12-07 16:08:03.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:03.854][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:03.855][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.856][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.859][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.860][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.861][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.862][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.866][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.867][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.876][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.877][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.883][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.884][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.885][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.887][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.894][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.895][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.898][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.900][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.901][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.902][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.904][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.905][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.907][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.908][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.911][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.914][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.915][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.918][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.921][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.925][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.928][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.929][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.932][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.935][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.936][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.938][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.939][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.942][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.945][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.946][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.947][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:03.948][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.951][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.952][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:03.952][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:03.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:03.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.958][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.958][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:03.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:03.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:03.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:03.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:03.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.969][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.970][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:03.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:03.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.975][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:03.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.978][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.979][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:03.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.982][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.983][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:03.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:03.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.986][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.986][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:03.987][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:03.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.989][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.990][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:03.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:03.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:03.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:03.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.005][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.027][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.056][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.063][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:04.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:04.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:04.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:04.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:04.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:04.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:04.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:04.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.205][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.208][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.226][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:04.226][private$selectFields]
biodb.TRACE[2024-12-07 16:08:04.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:04.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:04.229][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:04.230][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.233][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.240][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.251][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.252][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.254][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.255][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.258][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.261][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.262][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.264][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.265][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.269][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.272][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.276][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.283][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.293][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.297][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.301][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.304][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.305][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.306][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.307][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.308][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.310][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.311][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.312][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.313][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.314][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:04.315][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:04.316][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.317][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.319][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.319][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.322][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.323][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.324][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.326][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.326][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.329][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.330][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.331][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.333][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.336][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.337][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.340][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.341][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.343][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.344][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.345][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.347][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.347][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.348][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.350][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.351][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.352][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.354][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.355][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.370][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.373][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.463][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:04.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:04.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:04.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:04.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:04.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:04.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:04.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:04.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.520][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.552][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.595][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:04.596][private$selectFields]
biodb.TRACE[2024-12-07 16:08:04.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:04.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:04.598][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:04.599][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.602][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.603][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.605][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.609][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.610][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.624][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.631][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.631][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.635][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.638][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.642][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.646][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.647][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.648][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.650][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.652][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.653][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.656][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.659][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.663][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.664][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.665][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.666][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.667][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.668][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.672][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.674][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.675][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.678][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.679][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.685][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:04.686][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:04.687][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.690][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.691][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.693][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.697][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.698][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.700][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.704][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.708][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.708][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.711][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.717][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.721][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.722][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.724][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.725][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.731][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.732][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:04.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.819][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:04.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:04.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:04.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:04.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:04.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:08:04.857][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:08:04.857][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:08:04.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:04.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:04.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:04.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:04.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:04.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:04.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:08:04.871][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:04.873][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:04.875][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:08:04.876][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:04.877][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:08:04.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:04.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:04.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:04.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:04.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:04.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:04.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:04.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:04.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:04.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:04.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:04.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:04.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:04.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:04.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:04.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:04.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:04.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:04.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:04.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:04.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:04.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:04.938][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:08:04.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:04.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:04.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:04.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:04.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:04.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:04.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:04.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:04.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:04.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:04.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:04.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:04.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:04.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:04.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:04.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.039][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:05.040][private$selectFields]
biodb.TRACE[2024-12-07 16:08:05.040][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:05.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:05.042][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:05.043][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.044][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.046][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.046][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.047][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.049][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.053][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.053][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.054][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.056][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.059][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.063][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.064][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.065][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.066][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.067][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.070][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.073][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.074][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.077][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.078][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.080][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.084][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.085][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.086][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.087][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.088][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.091][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.092][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.095][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.098][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.099][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.109][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.110][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.116][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.117][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.120][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.127][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:05.128][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:05.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.131][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.132][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.135][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.138][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.142][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.145][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.146][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.149][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.150][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.152][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.153][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.156][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.157][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.159][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.160][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.163][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.164][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.166][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.171][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:05.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.182][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-12-07 16:08:05.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:05.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:05.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:05.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:05.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:05.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:05.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.328][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.346][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.367][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.406][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:05.407][private$selectFields]
biodb.TRACE[2024-12-07 16:08:05.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:05.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:05.410][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:05.411][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.413][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.414][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.417][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.420][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.421][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.424][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.425][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.426][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.432][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.433][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.435][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.440][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.442][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.443][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.446][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.453][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.456][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.459][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.463][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.466][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.473][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.477][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.477][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.480][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.484][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.484][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.487][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.488][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.491][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.494][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.495][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:05.496][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:05.497][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.499][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.500][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.501][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.503][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.506][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.507][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.512][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.514][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.518][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.521][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.525][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.528][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.528][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.532][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.533][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.535][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.536][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.557][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.628][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-12-07 16:08:05.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:05.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:05.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:05.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:05.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:05.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:05.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:05.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.682][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.686][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.761][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:05.762][private$selectFields]
biodb.TRACE[2024-12-07 16:08:05.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:05.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:05.764][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:05.765][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.768][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.769][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.770][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.772][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.775][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.776][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.779][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.782][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.786][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.788][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.789][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.790][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.793][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.796][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.797][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.798][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.800][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.801][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.803][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.804][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.805][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.807][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.808][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.809][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.810][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.811][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.814][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.823][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.824][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.827][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.830][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.834][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.835][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.836][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:05.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.837][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.838][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.841][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.844][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.845][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.846][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.848][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.849][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.851][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.852][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.853][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.855][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.856][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:05.857][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:05.857][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.860][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.861][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.864][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.867][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.868][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.869][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.870][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.874][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.877][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.881][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.884][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.885][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.886][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.888][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.889][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.891][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:05.893][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:05.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.895][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.896][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:05.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:05.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:05.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:05.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:05.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:05.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:05.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:05.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:05.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:05.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:05.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:05.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:05.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:06.022][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:08:06.023][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:08:06.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:06.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:06.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:06.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:06.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:06.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:06.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:08:06.040][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:06.043][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:06.044][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-12-07 16:08:06.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:06.047][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-12-07 16:08:06.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:06.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:06.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-12-07 16:08:06.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:06.055][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-12-07 16:08:06.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:06.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:06.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:06.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:06.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:06.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:06.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:06.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:06.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:06.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:06.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:06.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:06.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:06.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:06.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:06.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:06.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:06.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:06.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:06.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:06.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:06.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:06.121][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:08:06.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:06.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:06.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:06.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:06.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:06.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:06.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:06.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.174][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.177][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.195][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.223][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.224][private$selectFields]
biodb.TRACE[2024-12-07 16:08:06.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:06.226][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:06.227][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.227][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.230][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.231][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.234][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.237][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.238][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.241][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.244][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.248][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.249][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.250][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.251][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.252][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.255][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.258][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.259][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.262][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.263][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.264][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.265][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.266][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.269][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.270][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.271][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.272][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.273][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.276][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.277][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.279][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.283][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.284][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.286][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.287][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.288][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.290][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.293][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.297][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.301][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.304][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.305][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.306][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.308][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.311][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.315][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.316][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.316][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.318][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.319][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.320][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.321][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.323][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.324][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.325][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.327][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.330][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.331][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.334][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.338][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.339][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.345][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.352][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.352][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.353][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.355][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.356][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.359][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.360][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.362][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.363][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.380][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.441][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:08:06.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:06.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:06.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:06.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:06.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:06.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:06.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:06.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.524][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.560][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.577][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.599][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.606][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.607][private$selectFields]
biodb.TRACE[2024-12-07 16:08:06.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:06.608][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:06.609][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.610][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.613][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.614][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.616][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.620][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.621][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.623][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.627][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.630][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.634][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.635][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.637][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.639][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.641][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.642][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.643][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.645][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.645][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.653][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.657][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.658][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.659][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.661][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.661][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.662][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.664][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.665][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.666][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.668][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.671][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.672][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.678][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.680][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.685][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.686][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.688][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.689][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.690][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.693][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.696][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.700][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.701][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.703][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.704][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.707][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.708][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.708][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.709][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.711][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.712][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.713][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.714][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.718][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.721][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.723][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.725][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.728][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.729][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.730][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.732][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.733][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.734][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.735][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.739][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.740][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.740][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.742][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.743][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.746][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.746][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.747][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.749][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.750][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:06.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.765][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2024-12-07 16:08:06.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:06.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:06.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:06.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:06.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:06.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:06.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:06.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:06.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:06.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:06.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:06.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:06.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:06.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:06.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:06.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:06.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:06.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:06.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:06.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.991][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:06.994][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.995][private$selectFields]
biodb.TRACE[2024-12-07 16:08:06.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:06.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:06.997][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:06.998][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:06.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.001][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.002][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.004][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.008][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.009][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.010][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.011][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.015][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.018][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.022][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.025][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.029][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.030][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.032][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.033][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.036][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.039][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.040][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.041][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.043][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.044][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.047][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.047][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.050][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.054][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.057][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.064][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.069][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.071][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.076][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.078][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.079][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.082][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.083][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.084][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.085][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.086][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.087][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.089][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.090][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:07.090][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:07.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.094][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.095][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.101][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.102][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.105][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.108][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.112][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.112][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.115][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.119][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.119][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.122][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.123][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.126][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.126][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.127][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.129][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.130][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:07.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.142][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.149][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:08:07.260][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:08:07.261][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:08:07.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:07.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:07.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:07.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:07.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:07.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:07.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:08:07.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:07.276][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:07.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2024-12-07 16:08:07.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:07.280][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2024-12-07 16:08:07.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:07.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:07.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:07.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:07.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:07.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:07.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:07.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:07.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:07.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:07.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:07.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:07.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:07.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:07.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:07.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:07.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:07.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:07.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:07.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:07.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:07.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:07.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:07.341][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:08:07.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:07.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:07.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:07.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:07.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:07.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:07.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:07.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.394][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.397][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.415][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.440][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.444][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:07.445][private$selectFields]
biodb.TRACE[2024-12-07 16:08:07.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:07.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:07.448][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:07.448][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.449][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.451][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.452][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.453][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.459][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.470][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.471][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.478][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.482][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.486][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.487][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.489][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.490][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.493][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.493][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.496][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.497][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.498][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.500][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.503][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.504][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.510][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.511][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.517][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.520][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.521][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.522][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.524][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.525][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.527][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.531][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.532][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.534][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.535][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.538][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.539][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.542][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.543][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.545][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.546][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:07.546][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:07.547][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.550][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.551][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.552][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.553][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.557][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.558][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.560][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.564][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.567][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.568][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.569][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.571][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.572][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.574][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.578][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.579][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.579][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.581][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.582][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.585][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.588][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.589][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:07.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.601][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.605][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.608][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.655][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.662][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.688][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:07.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:07.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:07.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:07.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:07.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:07.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:07.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.746][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.784][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.787][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.833][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:07.834][private$selectFields]
biodb.TRACE[2024-12-07 16:08:07.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:07.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:07.836][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:07.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.840][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.841][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.843][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.847][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.848][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.850][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.854][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.857][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.861][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.862][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.865][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.868][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.869][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.872][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.873][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.875][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.879][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.880][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.881][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.882][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.883][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.886][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.887][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.890][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.893][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.894][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.897][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.901][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.905][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.907][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:07.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.908][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.909][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.912][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.916][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.917][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.918][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.920][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.921][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.923][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.924][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.927][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.928][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.929][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:07.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.931][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.932][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:07.933][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:07.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.936][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.937][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.940][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.941][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.943][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.944][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:07.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:07.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.947][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:07.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:07.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.950][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:07.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.954][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.955][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:07.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.957][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:07.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.961][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.962][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:07.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.964][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.965][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:07.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:07.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.968][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:07.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:07.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.971][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.972][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:07.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:07.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:07.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:07.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:07.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.103][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:08.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:08.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:08.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:08.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:08.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:08.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:08.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:08.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.156][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.178][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.207][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:08.208][private$selectFields]
biodb.TRACE[2024-12-07 16:08:08.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:08.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:08.210][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:08.211][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.214][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.215][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.218][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.221][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.225][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.229][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.230][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.232][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.233][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.234][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.236][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.237][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.239][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.243][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.244][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.245][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.246][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.247][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.248][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.250][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.252][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.253][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.254][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.255][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.257][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.258][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.261][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.261][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.264][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.268][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.268][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.271][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.275][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.278][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.282][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.285][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.289][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.290][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.290][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.292][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.293][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.296][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.297][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.299][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.300][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.301][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.303][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.309][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:08.310][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:08.311][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.312][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.314][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.314][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.317][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.318][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.319][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.321][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.322][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.324][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.328][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.331][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.332][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.333][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.335][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.338][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.339][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.341][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.342][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.343][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.345][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.346][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.348][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.349][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:08.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.364][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.382][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2024-12-07 16:08:08.474][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:08:08.475][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-12-07 16:08:08.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:08.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:08.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:08.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:08.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:08.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:08.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-12-07 16:08:08.488][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-12-07 16:08:08.491][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-12-07 16:08:08.492][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2024-12-07 16:08:08.493][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-12-07 16:08:08.494][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2024-12-07 16:08:08.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:08.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:08.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:08.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:08.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:08.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:08.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:08.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:08.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:08.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:08.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:08.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:08.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:08.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:08.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:08.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:08.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:08.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:08.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:08.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:08.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:08.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:08.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:08.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-12-07 16:08:08.556][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-12-07 16:08:08.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:08.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:08.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:08.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:08.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:08.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:08.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:08.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.615][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.639][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.664][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:08.664][private$selectFields]
biodb.TRACE[2024-12-07 16:08:08.665][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:08.666][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:08.667][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:08.668][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.670][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.671][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.674][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.677][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.678][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.681][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.682][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.684][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.686][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.688][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.689][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.690][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.692][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.692][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.695][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.699][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.700][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.702][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.703][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.706][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.709][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.710][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.711][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.713][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.714][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.716][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.717][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.718][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.720][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.723][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.724][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.727][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.728][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.729][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.730][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.734][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.735][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.736][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.737][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.738][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.741][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.743][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.745][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.745][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.748][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.749][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.752][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.755][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.756][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.757][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:08.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.759][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.759][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:08.760][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:08.761][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.764][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.765][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.767][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.771][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.772][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.774][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.778][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.781][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.782][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.783][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.785][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.786][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.788][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.789][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.792][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.793][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.794][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.795][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.796][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.799][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.800][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.801][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.802][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.803][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:08.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.822][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:08.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:08.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.907][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.914][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:08.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:08.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:08.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:08.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:08.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2024-12-07 16:08:08.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:08.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:08.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:08.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:08.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:08.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:08.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:08.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:08.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:08.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:08.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:08.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:08.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:08.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.047][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:09.048][private$selectFields]
biodb.TRACE[2024-12-07 16:08:09.049][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:09.050][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:09.051][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:09.052][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.054][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.055][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.056][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.058][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.061][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.062][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.065][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.068][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.069][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.072][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.073][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.074][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.075][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.076][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.079][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.083][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.083][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.084][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.086][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.087][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.090][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.090][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.093][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.094][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.095][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.097][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.097][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.100][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.101][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.104][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.107][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.108][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.111][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.112][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.114][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.115][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.118][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.120][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.121][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.122][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.125][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.126][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.132][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.134][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.135][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.137][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.138][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.141][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.144][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.145][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.146][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.148][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.149][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:09.150][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:09.151][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.153][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.154][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.155][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.157][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.160][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.161][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.164][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.167][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.170][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.171][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.174][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.177][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.178][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.181][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.182][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.184][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.188][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.189][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:09.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.204][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.275][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.279][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.282][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2024-12-07 16:08:09.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-12-07 16:08:09.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:09.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:09.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:09.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:09.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:09.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-12-07 16:08:09.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.330][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.421][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:09.421][private$selectFields]
biodb.TRACE[2024-12-07 16:08:09.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-12-07 16:08:09.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-12-07 16:08:09.424][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2024-12-07 16:08:09.425][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.427][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.428][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.429][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.431][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.434][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.435][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.436][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.438][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.441][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.442][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.443][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.445][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.445][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.448][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.449][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.452][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.453][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.455][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.456][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.457][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.458][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.459][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.462][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.465][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.466][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.467][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.469][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.470][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.472][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.473][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.476][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.479][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.480][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.483][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.484][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.486][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.490][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.490][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.491][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-12-07 16:08:09.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.493][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.494][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.497][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.500][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.501][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.502][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.503][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.504][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.507][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.508][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.509][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.511][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.511][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.512][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-12-07 16:08:09.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.514][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.515][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:09.516][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2024-12-07 16:08:09.517][ef$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.519][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.520][ef$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.523][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.526][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.527][ef$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.530][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.533][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.537][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.538][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.541][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.541][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.542][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.544][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.545][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.546][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.548][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.548][ef$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.551][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.553][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.555][ef$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.555][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2024-12-07 16:08:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-12-07 16:08:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-12-07 16:08:09.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.567][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-12-07 16:08:09.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-12-07 16:08:09.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-12-07 16:08:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-12-07 16:08:09.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-12-07 16:08:09.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-12-07 16:08:09.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-12-07 16:08:09.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-12-07 16:08:09.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-12-07 16:08:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-12-07 16:08:09.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.643][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-12-07 16:08:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-12-07 16:08:09.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-12-07 16:08:09.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-12-07 16:08:09.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-12-07 16:08:09.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.686][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2024-12-07 16:08:09.687][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-12-07 16:08:09.688][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-12-07 16:08:09.694][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:08:09.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:08:09.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:08:09.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:08:09.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-12-07 16:08:09.701][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-12-07 16:08:09.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-12-07 16:08:09.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-12-07 16:08:09.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-12-07 16:08:09.706][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-12-07 16:08:09.708][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-12-07 16:08:09.708][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-12-07 16:08:09.709][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-12-07 16:08:09.710][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-12-07 16:08:09.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-12-07 16:08:09.712][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-12-07 16:08:09.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-12-07 16:08:09.713][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-12-07 16:08:09.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1374 ]
>
> proc.time()
user system elapsed
78.214 1.848 168.341
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)